barSeed - Barley Seed Development Database

Probe CUST_1124_PI390587928

Source Contig U35_45113

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_1124_PI390587928	Hv_44K_v2	ACCTAAGCTCGCGTACATCGTGTGTTACGTCAAGGACGTGCCCAAGTCGGTCGCCTTCTA	92	GeneList: midnightblue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.138	0.294	0.560	2.798	3.624	7.133
Raw	3.405	16.345	29.164	255.651	96.587	212.446

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK376206	1073	2e-24	102 - 161	100	60 / 60	plus	ABC05448
MLOC	MLOC_52193.2	532	2e-24	105 - 164	100	60 / 60	plus	ABC05448
MLOC	MLOC_52193.1	645	2e-24	274 - 333	100	60 / 60	plus	ABC05448
JLOC1	JLOC1_33413.1	810	8e-25	205 - 264	100	60 / 60	plus
Harvest21	ABC43559	396	3e-25	93 - 152	100	60 / 60	plus
Harvest21	ABC05448	602	3e-25	94 - 153	100	60 / 60	plus	ABC05448
Harvest35	U35_45113	396	3e-25	93 - 152	100	60 / 60	plus
Harvest35	U35_2156	599	3e-25	94 - 153	100	60 / 60	plus

Contig Sequence (396 bp)

>U35_45113 396 Hv_44K_v2
AGAGAGCCAAGGAAGACACAACAACTCGAGGCAAACACCGTGCCATCTGAAAGTGGTTAC
AAGGGACGAGCAATGGCGTCTGGGGCGGTGAGACCTAAGCTCGCGTACATCGTGTGTTAC
GTCAAGGACGTGCCCAAGTCGGTCGCCTTCTACGCCGACGCCTTCGGCTACAACGTCCGC
CGCGTCGACGACTCGCAGAAGTAATCCCCATCACCGTATGCAAGCACCTAGGCCTACCCA
AGCTGGCCGCCGGGGCAACCTGAGAATGACATGTGTGTGCATCGTCTGTTCTGTTCTGCG
CGCAGGTGGGCGGAGCTGGACACCGGCTCGACGACCATCGCGTTCACGGCGCTGCACCAG
AGGGAGACGGACGCGCTCACTGGCGAGGTGCAGCTG

Homology of Contig U35_45113 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None