barSeed - Barley Seed Development Database

Probe CUST_11249_PI390587928

Source Contig U35_5778

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_11249_PI390587928	Hv_44K_v2	ATGTAAATATACTCCTTCCGTTTCTAAATACTAGTAAACATGCCCGTGCGTTGCAAAAAA	581	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_33861.1	3045	3e-22	2987 - 3042	100	56 / 56	plus	ABC14275 ABC14276
JLOC1	JLOC1_21879.2	2926	1e-22	2801 - 2856	100	56 / 56	plus
JLOC1	JLOC1_21879.1	2883	1e-22	2758 - 2813	100	56 / 56	plus
Harvest21	ABC14276	597	5e-23	12 - 70	98	59 / 60	minus	ABC14276
Harvest35	U35_5778	652	3e-25	582 - 641	100	60 / 60	plus

Contig Sequence (652 bp)

>U35_5778 652 Hv_44K_v2
GATCAGATTGTGGTGGGGGAAGCGATGTCTCTGTGGTCACCATGAGCTACAAGAAAGGTC
ATGCGAGCTGTGGCGTCGTTGCAGGCGGCGAGAATGGCCATATTTCCTGCGGTGGAAGCA
TGGTTATTGAAAGCTCCCAGGAGGGGAACACCAAGTCAGGTGGATGCGGTTCAGGTTGTG
GTGGTGGAGGCTGTGGCTGCATGGTCATGGAAAGCTCCAAGACTGGCTTCGCCAAGTCAG
GCGGTTGCGATTCAGGCTGTGGTGGTGGTTGTGGTTCGGGCTGTGGCGGTGGTTGTGGCA
ACATGGTAATGGAAAGCTCCAAGACTGGCTTCGCCAAGTCATGCGGATGCGGTTCGGGCT
GCGGCGGTGGCTGCGGTTCGGGCTGCGGGGGTGGCTGCGGCAGCATGGTCACTTCATAGT
AGTTATTGCCTTCCAGTTCCATGCCCTTCGATTCCACTCATTGCTTGTAAATAATGTTGA
GGTCGGTTGTTGGTTGGTTCAGTTGTGGTGTGGGAAGGTCTGGGTTGTCCCAGTCCGGTA
ACCGGGCATTGCCTAATTCTATAAAAAATAGAATGACATGTATGTAAATATACTCCTTCC
GTTTCTAAATACTAGTAAACATGCCCGTGCGTTGCAAAAAAAAAAAAAAAAA

Homology of Contig U35_5778 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None