barSeed - Barley Seed Development Database

Probe CUST_11248_PI390587928

Source Contig U35_5779

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_11248_PI390587928	Hv_44K_v2	ATGGTACATAAGCGTGAAACCGTTGAGCCTGATACTACAGTGGCTTCTGAAATGGTGAAA	432	GeneList: tan MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.324	0.707	1.661	2.380	1.012	1.099
Raw	6.906	24.244	48.878	115.319	17.277	20.214

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_33861.1	3045	2e-24	2183 - 2242	100	60 / 60	plus	ABC14275 ABC14276
JLOC1	JLOC1_21879.2	2926	8e-25	1997 - 2056	100	60 / 60	plus
JLOC1	JLOC1_21879.1	2883	8e-25	1954 - 2013	100	60 / 60	plus
Harvest21	ABC14275	1218	3e-25	433 - 492	100	60 / 60	plus	ABC14275
Harvest35	U35_5779	1219	3e-25	433 - 492	100	60 / 60	plus

Contig Sequence (1219 bp)

>U35_5779 1219 Hv_44K_v2
GGTGGCATGGCTCTCATTCGAGAATTAGTTGGAGTAACAAAGTCATCAAAGCAACCATTT
CAGCTTGCAGAATTCATGAAAAACAATTGGTCTTTTAATAACTCCAACTTATCCATCACT
CATGACCTGAAACCAAGCAAGGATGGCTGCATACAGGAGCTCAAATACGGCAACAAACTG
ATCAAACTATACAGGGGAAGGAGACTAGCATATGAACTCAAATGCTGCAGTCAGCATGCT
GATGATACTACAGCAGTTACTGCTGTTAAGTTCTCAGCTGAACACCCCTATGGCAAAGCA
GTCGCACTACTTGACACTGAATCAGAATTTATCACAGTGGACGAAGATTGGTTTCTGCTT
CCCTGGGTCGCAATATCATTCTTATTCCTGAATTCCATTGGCAAAGATGGCGTGAAGCTC
ATCGAAGGTGCCATGGTACATAAGCGTGAAACCGTTGAGCCTGATACTACAGTGGCTTCT
GAAATGGTGAAAGGTGGAGCAGCAGGTGCCACTGCTGGTCTGGCGCAATGTGGCCCTTGT
GGCACGGCTGGTGGCGGTGACATGGTCCTGGCAAGTGACAAGGCTGGTCATGCTGGCTGT
GGCGGCTCAGTCACTTCAAGCGGCAAGGTGGCTGATTCTAAGTGCGGTGGTTGTGGATCA
GATTGTGGTGGGGGAAGCGATGTCTCTGTGGTCACCATGAGCTACAAGAAAGGTCATGCG
AGCTGTGGCGTCGTTGCAGGCGGCGAGAATGGCCATATTTCCTGCGGTGGAAGCATGGTT
ATTGAAAGCTCCCAGGAGGGGAACACCAAGTCAGGTGGATGCGGTTCAGGTTGTGGTGGT
GGAGGCTGTGGCGGCATGGTCATGGAAAGCTCCAAGACTGGCTTCGCCAAGTCAGGCGGT
TGCGATTCAGGCAGTGGTAGTGGTTGTGGTTCGGGCTGTGGCGGTGGTTGTGGCAACATG
GTAATGGAAAGCTCCAAGACTGGCTTCGCCAAGTCATGCGGATGCGGTTCGGGCTGCGGC
GGTGGCTGCGGCAGCATGGTCACTTCATAGTAGTTATTGCCTTCCAGTTCCATGCCCTTC
GATTCCACTCATTGCTTGTAAATAATGTTGAGGTCGGTTGTTGGTTGGTTCAGTTGTGGT
GTGGGAAGTTCTGGGTTGTCCCAGTCCGGTAACCGGGCATTGCCTAATTCTATAAAAAAT
AGAATGCCATGTATGTAAA

Homology of Contig U35_5779 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os11g40590.2	931	7e-63	protein\|DUF1399 containing protein, putative, expressed
Brachypodium v1_2	Bradi4g13280.1	1177	2e-92
Arabidopsis v10	None