barSeed - Barley Seed Development Database

Probe CUST_11241_PI390587928

Source Contig U35_5786

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_11241_PI390587928	Hv_44K_v2	CATGAAAGAACTTGGCTTAAAGAGGGCTTGCCATTTTGGATGGCCAAATGTATATACATT	798	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_11135.2	1755	2e-24	807 - 866	100	60 / 60	plus	ABC15142 ABC16214
MLOC	MLOC_11135.1	1941	2e-24	1012 - 1071	100	60 / 60	plus	ABC15142 ABC16214
JLOC1	JLOC1_7340.1	2029	8e-25	955 - 1014	100	60 / 60	plus
Harvest21	ABC13536	861	3e-25	799 - 858	100	60 / 60	plus
Harvest35	U35_5786	861	3e-25	799 - 858	100	60 / 60	plus

Contig Sequence (861 bp)

>U35_5786 861 Hv_44K_v2
GGCAAGCACAGCCACGTCCTGGACTGGCCGGCTTGACTCCACCCCTCCTCTAGCTTCCCA
GAGAAACCCGGCCACCATCTTCCACATTTTCAGGTTTGTCGATTCTCGGCCCTTATTATC
ACGGTAGCTTGCCATGGACGCTGGCGCGGTGGCTGGGTGCCTCCGGAACAAGACCGTCCT
CGTCACCGGCTCAACTGGCTTCCTCGGAAAATTGATGGTGGAGAAGATACTGAGAGTACA
GCCAGACGTGAAGAAGGTCTACCTTCTGGTGCGCGCGCCGGATGCCGCCTCCGCCGAGCA
GCGTATCCTGACCCAGGTGCTAGGGAAGGACCTGTTCAATACCCTGCGGGAAAAGCATGG
GCTTGCTGGCTTCCAGAAGCTGATCAAAGAGAAGATAGTTCCTCTCGCCGGAGACGTCGG
GACTCGCAACTTTGGGCTCGACAGCTCCAGATCTGACGACCTGTATCAGGAGATCGATGT
TATCATCCATGGGGCTGCAACAACTAGCTTTTATGAAAGGTACGATGTTGCTTTGGCATC
GAATGCATTAGGAGCCCAATATGGATGCGAATTTGCAAAGAAGTGTCCTAATCTGAAATT
GTTGCTTCATGTTTCCACTGCTTTTGTAGCTGGTACTCAAGAAGGACTTTTACTGGAGAA
AGCACTCAAGATGGGTGAAACACTACGGCCTGGTTACCACTTGGACATTGAAGCTGAGTT
GCAGCTGGTTGAGAAGGTGAAGGCTGAACTTGCAGAGGCTAAGAGTGGTAGTTCAGACCA
ATCATCAGAGAAGACAGCCATGAAAGAACTTGGCTTAAAGAGGGCTTGCCATTTTGGATG
GCCAAATGTATATACATTTAC

Homology of Contig U35_5786 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os04g28620.1	500	8e-94	protein\|male sterility protein, putative, expressed
Brachypodium v1_2	Bradi4g37860.3	498	2e-141
Arabidopsis v10	AT5G22500.1	491	2e-64	\| Symbols: FAR1 \| fatty acid reductase 1 \| chr5:7470541-7473916 FORWARD LENGTH=491