barSeed - Barley Seed Development Database

Probe CUST_11236_PI390587928

Source Contig U35_5791

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_11236_PI390587928	Hv_44K_v2	AAGACATAAAGAATGTCCTTTACACAGACAGTGCTGTGGCTGGTGAAGCAGCTGGTATTG	1612	GeneList: cyan MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.655	1.203	1.103	0.756	0.530	0.579
Raw	256.623	248.224	233.046	227.070	60.681	74.564

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_16279.2	3499	2e-24	1478 - 1537	100	60 / 60	plus	ABC09627
MLOC	MLOC_16279.1	3519	2e-24	1615 - 1674	100	60 / 60	plus	ABC09627
JLOC1	JLOC1_11206.1	3493	8e-25	1530 - 1589	100	60 / 60	plus
Harvest21	ABC15284	791	3e-25	646 - 705	100	60 / 60	plus
Harvest35	U35_5791	1758	3e-25	1613 - 1672	100	60 / 60	plus

Contig Sequence (1758 bp)

>U35_5791 1758 Hv_44K_v2
CTCGCAGACGCCCCCGCACCGCAGCGAGCCCAACAAACCCTCGCGCGCCCCCACATCTCC
TTCGCCGACGCGGCCATGGCGGCGGTGGCCACTGTCAGCTCGGCCGGCGGGATCCTCGCC
ATGCTCCACGAGCCGGCGGAGGAGCTCAAGCTGCACGCGCTCGCCAGCCTCAACTCCGTC
GTCCACCTCTTCTACCCCGAGATCTCCACCAGCATCCCCACCATTGAGAGCTTGTATGAA
GATGAGGAGTTTGACCAGAGACAGCTAGCTGCACTAGTTGTTTCTAAGGTATTTTACTAC
TTGGGCGAGTTAAATGATGCACTGTTGTATGCACTTGGTGCTGGGCCTCTGTTTGACGTT
TCTGAGGATTCAGACTATGCCCATGCTCTTCTAGCCAAAGCATTAGATGAATATGCGAGT
TTCAAGACAAAAGCTTCTAAAGCTACAGAGGAAGAAGAAAATGTGGATCCGAGATTGGAA
ACCATAGTGGAGAGGATGTTGGAGAAGTGCGTTCTTGATGGGAAATACCAACAGGCCATG
GGTATGGCTGTTGAATGCAGGAGACTGGATAAACTGGAGGAAGCAATTGTTCGGTGTGAT
AATATTCACGGGGCTCTTTCATATTGCATCAACCTTTCTCATCAATATGTTAGTCACCGT
GAATATCGCTGTGAGGTTCTTCGCTGTCTTGTTAAAATATATCAGACTTTGCCGCATCCA
GATTTTCTGAGCATCTGCCAGTGTCTTATGTTTCTGGGTGAGCCTGAAACTGTTGCTAAT
ATATTGGACACACTACTTTCTGGAAGCAAGGATGATGCTCTCCTTGCATACCAAATTGCC
TTTGATCTGGTGGAAAATGAAAATCAGGCCTTCCTTTTGAACGTGAGGAATCGCCTGGAC
TCACAGACTCCTGGTCAGTCTAATCCTGATAGTGGTTCGGCTTTACCGGCCGATCAGACT
GTTAATGCGGGTGCAACTAGCACAGAACCAGCGGGTGATGTTCAGATGGGAGATGACACT
ACTACAGCAAATGGAAATGCTCACCCAGTGGATCCAAATGAGGCAGCTCATGCTGATAAG
CTTGCGAAACTTAAAGGAATACTGTCAGGGGAGAAGTCTATTCAGCTTACGCTGCAATTT
TTGTATAGCCACAACAGGTCTGATCTTCTAATTCTGAAGACAATAAAGCAGGCTGTGGAA
ATGAGGAACAGTGTTTGCCATAGTGCAACTATTTGTTCGAATGCGATCATGCATGCAGGA
ACAACTGTAGATACCTTTCTAAGAGAGAATCTGGAGTGGTTAAGCAGGGCAACTAATTGG
GCTAAATTCAGTGCAACAGCTGGGCTAGGTGTGATTCATAGAGGCCACCTTCAGCAAGGT
CGGGCTTTGATGGCCCCATACCTACCTCAAAGTGGTGCAGTTGGTGGTGGCAGTCCATAC
TCGGAAGGTGGTGCCCTCTATGCTTTAGGTTTGATTCATGCCAACCATGGTGAAGGAATC
AAACAATTCCTCCGTGAAAGCCTTCGCAACACCAGTGCAGAGGTCATCCAGCATGGTGCC
TGTTTGGGACTTGGGCTTGCATCTCTGGGGACAGCAGATGAAGAAGTGTTTGAAGACATA
AAGAATGTCCTTTACACAGACAGTGCTGTGGCTGGTGAAGCAGCTGGTATTGGCATGGGT
TTGCTCATGGTTGGGACAGCCAGCGAGAAGGCCACTGAGATGCTCGCTTATGCACATGAT
ACACAACATGAAAAGATT

Homology of Contig U35_5791 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os08g12820.2	670	protein\|proteasome/cyclosome repeat containing protein, expressed
Brachypodium v1_2	Bradi5g21080.1	1021
Arabidopsis v10	AT2G32730.1	1004	26S proteasome regulatory complex, non-ATPase subcomplex, Rpn2/Psmd1 subunit \| chr2:13880189-13885464 FORWARD LENGTH=1004