barSeed - Barley Seed Development Database

Probe CUST_11230_PI390587928

Source Contig U35_5797

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_11230_PI390587928	Hv_44K_v2	GGGCTTCCTGAAACCATACACGAAACGGAAAACCAACACTTGAAAGGAGGCTGCAAAAAA	1671	GeneList: yellow MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	3.071	2.668	1.221	0.931	0.615	0.633
Raw	554.013	735.361	306.252	352.786	82.884	94.021

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK249906.1	1766	9e-22	1682 - 1736	100	55 / 55	plus	ABC13421
MLOC	MLOC_53082.4	1852	9e-22	1770 - 1824	100	55 / 55	plus	ABC13421
JLOC1	JLOC1_34067.1	1912	5e-22	1787 - 1841	100	55 / 55	plus
Harvest21	ABC13421	1734	2e-22	1652 - 1706	100	55 / 55	plus	ABC13421
Harvest35	U35_5797	1743	3e-25	1672 - 1731	100	60 / 60	plus

Contig Sequence (1743 bp)

>U35_5797 1743 Hv_44K_v2
AGGAGTTGGTGTCCCCGCCCTCAGCGACCGGCTAACCCACATCCCTTCCCGCTGCCGCCT
CGCCGCCGGCAGCCGGCCGCCGTCTCGGTCTAACCGGCCGGCCCAAAGGAGGAAGACGAG
GCGAGTCCTCACGGCGTCGCGCCCCCATGGACATACTCGAGAAAATTCGCGGAGGCGGCG
ACAAACCGGCCGGGATGGAGACGCCCCGGAAGCCGGAGTCCTGGGTGGAGATTTCAGAGT
CCGTCTCGCGGCTCTGCAGCTTCGACGCCGGCGGGGGCGGGGGCGTATCTGTTAAACTTG
TCCAGGATAACAGGATGGCACATGATAAGTTGGTTGATTCTTTCTTGAACAAGTTTTTTC
CATCAGGTTATCCATACAGTGTGAATGAAGGTTACCTAACATATACCAAATTCCGAGCAC
TCCAGCATTTTTCTAGTGCTATGCTGCATGTGTTATCGACCCAGTCTTTATTATTTGCTG
CAGGTCTACGGCCTACCCCTGCACAAGCAACGGCTGTAAGTTGGATTCTAAAAGATGGGA
TGCAGCATGCGGGAAAGCTCATATGTAGCGGCATGGGGGCAAGAATGGATTCAGAGCCAA
AGAGTTGGAGGATATTTGCTGATGTTCTCTATGATTTTGGTACCGCCTTGGACTTCATTT
CACCACTGTGTCCACAACTTTTTCTTGAAGTGGCGGGCTTGGGAAATTTCGCAAAGGGAA
TGGCTGTGGTTGCTGCCAGAGCGACAAGGCTACCGATATATTCATCTTTTGCCAAAGAAG
GTAACCTTAGTGACTTGTTTGCTAAAGGGGAAGCCATCTCGACACTTTTCAATGTTATGG
GGATAGGAGCTGGCATTGGATTATCATCTACTGTATGTTCAACAACTCAAGGGAAGCTAA
TCATAGGCCCGTTGCTTTCTGCCGTACATATATGGGGAGTCGTGCAAGAGATGAGGGCAA
CTCCTATAAACACACTTAATCCACAAAGAACAGCAATGGTGGTTGCTGATTTCATTAAGA
GTGGAAAGGTTTCAAGCCCAGCGGAGCTGAGATACAGAGAAGATCTTCTGTTCCCAAACC
GGTTAATAGAAGAAGCAGGCAGTGTGAAAGTTGGGCAACCGCTTCGCAGGGTTTTGAGCC
CACGTGATGTCGAACAGCTGAGGTCTACCTTCCCAAAGGAGAAATTTCTACTCGCCCAAA
AAGGCGACAAGGCTTACATGGTCCTTGAGCAGAGCGCAACTGGAGAGGATGCGCTTCGGG
GGTGGCTGGTCGCTGCCTTGGCTTCGGAGATGGGAGAGATCAGGTGCTGGATCGCGCGAC
GCCGTCCTGAATGACGCCTATCAGAAGATGGAGAGCGTGTTCCCCATGTTCGTTTCGGAA
GTGAAGAGCAGGGGCTGGTACACGGGCCAGTTCTTGGATGGAAATCACAGCCGGATCGCA
TACGCGAAATCCGAATGACCGCGCATGCTGGATGAAGCGCAGGCGGCGCGTCCCGCCTGT
GATTTGCGGAGCTGGACGGATCAATTTTGTTTCATGTCACGTTGTTTGCGGCAAAACAAT
TTTTTTTGTGTGTGTGTCTGTCAGTCGTCAGTCGTAGGATCGCCATTCTATTTGTATGCG
CCTTCGGTGCAGTGTATGGGTGCACTGAAACGAATGGATGCTTTGGCTTCAGGGCTTCCT
GAAACCATACACGAAACGGAAAACCAACACTTGAAAGGAGGCTGCAAAAAAAAAAAAAAA
AAA

Homology of Contig U35_5797 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os04g43690.1	439	0.0	protein\|DUF647 domain containing protein, putative, expressed
Brachypodium v1_2	Bradi5g15767.1	438	0.0
Arabidopsis v10	AT2G31190.1	433	3e-175	\| Symbols: RUS2, WXR1 \| Protein of unknown function, DUF647 \| chr2:13291458-13293681 REVERSE LENGTH=433