- Probe CUST_11223_PI390587928
- Source Contig U35_10805
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_11223_PI390587928 | Hv_44K_v2 | GGAGTGAGATTGACTGTTTGTTTTGTGTATCTGTTACTGGTATGTTCAATGCTTAAATTG | 598 | GeneList: turquoise MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 1.326 | 1.773 | 1.347 | 0.765 | 0.475 | 0.434 |
| Raw | 27.270 | 53.326 | 37.653 | 33.056 | 6.204 | 6.706 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_23216.4 | 729 | 2e-24 | 567 - 626 | 100 | 60 / 60 | plus | None |
| MLOC | MLOC_23216.5 | 810 | 2e-24 | 648 - 707 | 100 | 60 / 60 | plus | None |
| MLOC | MLOC_23216.1 | 1310 | 2e-24 | 1040 - 1099 | 100 | 60 / 60 | plus | None |
| MLOC | MLOC_23216.2 | 1461 | 2e-24 | 1191 - 1250 | 100 | 60 / 60 | plus | None |
| MLOC | MLOC_23216.6 | 625 | 2e-24 | 344 - 403 | 100 | 60 / 60 | plus | None |
| MLOC | MLOC_23216.3 | 1035 | 2e-24 | 765 - 824 | 100 | 60 / 60 | plus | None |
| JLOC1 | JLOC1_16056.3 | 628 | 8e-25 | 348 - 407 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_16056.2 | 686 | 8e-25 | 406 - 465 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_16056.1 | 823 | 8e-25 | 543 - 602 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_10805 | 758 | 3e-25 | 599 - 658 | 100 | 60 / 60 | plus |
Contig Sequence (758 bp)
>U35_10805 758 Hv_44K_v2 GGAGCGAAGAGCTAAACTTCTGGGGAGGCGAGACCAACTTTGTTGGTATTATCAATATCT GAGACAAGTTGTTCACAATGAGCAGCTGAGAATTGAACTTCAAAGTTTGATGTGTGAGCT GGAGGCCGAAGGTTTTTTCAGCATTGCCGATGATTCTATCGATTGGGACAAGCAATGCTT TTCACAAGACGTGGACACATTCGACAAGCAAGTTTTCGTCAGGGCTGATCTTCCAAAAAT ATTATGTTGTTCGTGGAATTATGGATTATCAGGCAATGTCACTTATGAAGGATGACTCAT GCTCATGGGACCAAGTTTTTAAAAAGGTTGTTGACAAACCATATCATAGGTGGATACAAA ACATTCCTCATCTGTTATGGATGGACACAAGATACTATAAGCACCAGTTCTATGACATCA TTCATCAACCATTGCAACTGTTCTTACCGACACCGTGATCTTCTTAACCTCTCCATGGCG TGAAGCTTTGAATTGTTATTTTGTACGATATACCTGGATCTATATTCTGGGACCAAGGAA AATAAAGAAAGTTGGCATCATTAGATGCAGAGTAATCCATGGAAAAGTTGTGGCCCGTGG AGTGAGATTGACTGTTTGTTTTGTGTATCTGTTACTGGTATGTTCAATGCTTAAATTGTA CTCCCTCCGTTCCTAAATATAAGACCTTTTAGAGATTGTACTATAAATTACATACGGATG TACATAGACATATTTTAGAGTATAGATTCACTCAAAAA
Homology of Contig U35_10805 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |