barSeed - Barley Seed Development Database

Probe CUST_11216_PI390587928

Source Contig U35_10814

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_11216_PI390587928	Hv_44K_v2	TTTTCGGTGTTCACTCACAATGACAAATGACAAGGGAAGGGCTTCAAAGAAGGTCGCTGA	365	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK356573	3164	7e-23	398 - 457	98	59 / 60	plus	None
MLOC	MLOC_73424.2	395	7e-23	170 - 229	98	59 / 60	minus	None
MLOC	MLOC_73424.1	485	7e-23	192 - 251	98	59 / 60	minus	None
JLOC1	JLOC1_48883.1	406	4e-23	156 - 215	98	59 / 60	plus
Harvest35	U35_10814	568	3e-25	366 - 425	100	60 / 60	plus

Contig Sequence (568 bp)

>U35_10814 568 Hv_44K_v2
CACTCCGAGCCGTCCTTCTCACTCCACTTCTTACTCTTCCAGTCTGTCGCATCCACCAAT
TTAAACCTCCCACGCGAAGGGAAGCGGAGAGAAGACTTATTTTCATTTCCAATCCAATAA
AAAAAGAAAGAGACTTTTCCTTTTGCGCTCCGGTGATTAAGGATTTGGTGGCGGAGGCGG
CAGGAGGCTCAGGCGGCGCGTGTCAATCGCTGCTGGGGCAAGCGGATGCGCCGCGTCGGA
TCCGCCGGAGAGCCTATGACCTATTCTCCTTCTGCGACACAACTCCTTGAAGGACTCGCT
GGGGGTTTGAAATTATAATGATTCTTAGACCCTTCCCTGGCTTCTGCTACAGAGTGGAAA
TTGAATTTTCGGTGTTCACTCACAATGACAAATGACAAGGGAAGGGCTTCAAAGAAGGTC
GCTGAGGGTTCATCCTCTGCTTTGGCTGTGCCTGATGGAAGAGCCAGCAGTGGACCTCAG
AAGGGGCGGTTGTCCAATGGGAGGACAACGGGTCCAGCAAGGCGCTCGACCAAGGGGAAT
TGGACCCTAGAAGAGGATGATATACTTC

Homology of Contig U35_10814 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None