- Probe CUST_11215_PI390587928
- Source Contig U35_10815
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_11215_PI390587928 | Hv_44K_v2 | AGATTGCTGTGCTCAAGCAATCGCTCCAGACTTTGGAGATGGCGAGCCAGGAGCTGAGGA | 862 | GeneList: darkorange MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 0.614 | 1.371 | 3.383 | 2.621 | 1.000 | 0.757 |
| Raw | 4.801 | 20.683 | 44.851 | 54.974 | 6.329 | 5.349 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | AK363002 | 2978 | 2e-24 | 1781 - 1840 | 100 | 60 / 60 | plus | ABC47683 |
| MLOC | MLOC_56552.1 | 6869 | 2e-24 | 2172 - 2231 | 100 | 60 / 60 | plus | ABC20728 ABC47683 |
| MLOC | MLOC_56552.3 | 4982 | 2e-24 | 385 - 444 | 100 | 60 / 60 | plus | ABC20728 ABC47683 |
| MLOC | MLOC_56552.2 | 7106 | 2e-24 | 2172 - 2231 | 100 | 60 / 60 | plus | ABC20728 ABC47683 |
| MLOC | MLOC_56551.1 | 2495 | 2e-24 | 1047 - 1106 | 100 | 60 / 60 | plus | ABC20728 ABC47683 |
| JLOC1 | JLOC1_36585.3 | 7094 | 8e-25 | 4864 - 4923 | 100 | 60 / 60 | minus | |
| JLOC1 | JLOC1_36585.2 | 7055 | 8e-25 | 4825 - 4884 | 100 | 60 / 60 | minus | |
| JLOC1 | JLOC1_36585.1 | 6978 | 8e-25 | 4748 - 4807 | 100 | 60 / 60 | minus | |
| JLOC1 | JLOC1_36584.1 | 2492 | 8e-25 | 1047 - 1106 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC22897 | 922 | 3e-25 | 863 - 922 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_10815 | 922 | 3e-25 | 863 - 922 | 100 | 60 / 60 | plus |
Contig Sequence (922 bp)
>U35_10815 922 Hv_44K_v2 CCGCCACCAGCCCCTGCCGCCCCACCAAGCGCATCGGCATCGGCATCGCTGGCGCGGCCA CCAGGAAGAGGAAGCCCGCCACCACCACCACCACCAATGGCCACCACGTCGCCACCCCCG CCGCCACCGCCCAAAGGCCCACCACCGCCACCAGCACCCAAAGGCCCACCGCCACCACCA GCACCCAGAGGCCCACCTCCGCCACCGCCGCCCGGAGGAAAGAAGGGAGGGCCGCCGCCG CCGCCACCGCCGGGAGGCAAGAAGGGAGGGCCGCCCCCGCCGCCCGCCTGGGCGTCGTCC TCGAGGCCACCGGCGGCCCCAGGCGGGCCGTCCGGCGCAGAGGACCCGCGGACGAAGCTG AAGCCGCTGCATTGGGACAAGGTCAACGTGGCGGCCACCGACCATTCCATGGTGTGGGAC AAGCTCACCGGCGGCTCATTCAACTTGGACGAAGGCACCATTGAGGCCCTGTTCGGCACT GCGGCGGTGAACCGCAAGACCAAATCCGCGGACGCCAAGGACTCCTCGAGCGGCCTCGGG CGCTCCAACTCGGAGGAGCAGATATTCCTGATCGAGCCACGCAAGTCGCACAACATCTCC ATCATCCTCCGGTCCCTCACCGTGGGGCGGGACGAGATCATCGACGCGCTGCGCGATGGG AACACCGAGCTCGGCACTGACGTCCTCGAGAAGCTGTCCCGGCTCAGCATCTCCAAGGAG GAAGAGTCCACCATCCTCAAGTTCTCTGGAAACCCCGACAGGCTTGCCCCTGCGGAGGCC TTCCTTCTCCGGCTCCTGCTTGATGTGCCCAACCCGTTTGCCCGTGTTGATGCGCTGCTG TTCAAGGTAAACTACGCTTCTGAGATTGCTGTGCTCAAGCAATCGCTCCAGACTTTGGAG ATGGCGAGCCAGGAGCTGAGGA
Homology of Contig U35_10815 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | LOC_Os02g50570.1 | 907 | 1e-94 | protein|retrotransposon protein, putative, unclassified, expressed |
| Brachypodium v1_2 | Bradi3g59780.1 | 885 | 4e-103 | |
| Arabidopsis v10 | None |