barSeed - Barley Seed Development Database

Probe CUST_11213_PI390587928

Source Contig U35_10818

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_11213_PI390587928	Hv_44K_v2	TATGGGTGAAGATATCCTACCATATCTGGAGCCTTTGATATGCAGATTAGTTATCTCTTT	571	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_639.1	3391	2e-24	1090 - 1149	100	60 / 60	minus	None
MLOC	MLOC_639.2	2887	2e-24	1081 - 1140	100	60 / 60	minus	None
JLOC1	JLOC1_393.1	2871	8e-25	1725 - 1784	100	60 / 60	plus
Harvest21	ABC32280	424	3e-25	4 - 63	100	60 / 60	minus
Harvest35	U35_10818	634	3e-25	572 - 631	100	60 / 60	plus

Contig Sequence (634 bp)

>U35_10818 634 Hv_44K_v2
GGCGAATTGGGCCCTTCAGAAGATGCTCGAGCGGCCGCTGCCTAAGTTATTGATACAATG
GCTATCAACTTACCAAGACACGTTTTTGGACCAGTTCTTGAATTTGCTTCTGTGAACTTT
CGTCACATTAATCCCAAGTATCGCGAGGCTGCTGTTACTTCGCTGGGTGTTGTCTCAGAA
GGTTGTTGTGAACATTTTAAGGATAAGTTGGAAGAATGTCTCAAAGTTGTTTTAAAAGCT
TTAAAGGATCAAGAGCAGATGGTTAGAGGTGCTGCATCTTTTGCTCTTGGTCAGTTTGCT
GAACACTTGCAGCCAGAAATTCTATCTCACTATGAGAGTGTACTTCCATGCATCTTAAAT
GCACTTGAAGATCCATCAGATGAAGTTAAGGTAAAATGACCTACTTCAGGTGGCATCACC
TCTGATAAATAGGCAGAAACTTTGGATATAAATGATATTGAATTATTGATTAGCTTTTGA
GACATTTTCTGAAGTATAATTAACTAATGCCAATAAGCTATGGGATCTTGTAGGAGAAAT
CATACTATGCACTGGCGGCGTTCTGTGAAGATATGGGTGAAGATATCCTACCATATCTGG
AGCCTTTGATATGCAGATTAGTTATCTCTTTACC

Homology of Contig U35_10818 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value
Rice v7	None
Brachypodium v1_2	Bradi1g67430.2	907	3e-65
Arabidopsis v10	None