barSeed - Barley Seed Development Database

Probe CUST_11208_PI390587928

Source Contig U35_10826

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_11208_PI390587928	Hv_44K_v2	TTTTTCTGTGATGGAGGAGATTATGATAGCTATTATGGCCGCTTCTTCCTCAACTGGTAT	661	GeneList: tan MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.336	0.736	2.014	2.502	1.098	0.751
Raw	12.626	43.394	103.508	213.078	31.943	23.418

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK365263	2402	6e-24	1480 - 1538	100	59 / 59	plus	None
MLOC	MLOC_36693.2	1680	6e-24	737 - 795	100	59 / 59	plus	None
MLOC	MLOC_36693.1	1832	6e-24	744 - 802	100	59 / 59	plus	None
JLOC1	JLOC1_23664.1	1880	3e-24	738 - 796	100	59 / 59	plus
Harvest21	ABC21483	761	3e-25	662 - 721	100	60 / 60	plus
Harvest35	U35_10826	761	3e-25	662 - 721	100	60 / 60	plus

Contig Sequence (761 bp)

>U35_10826 761 Hv_44K_v2
GAGGTGGCGGAGGCCGACGAGCTGGTGGCGCAGCTGCCGTTGCTCAAGGCGGCGGGCGTC
GACGGCGTCATGGTCGACTGCTGGTGGGGCAATGTCGAGGCGCACCACCCGCAGGAGTAC
AACTGGACCGGATACAAGCGCCTCTTCCACATCATCAGGGACCTCAAGCTCAAGCTGCAG
GTGGTCATGTCGTTCCATGAGTGTGGAGGCAACGTCGGAGACGACGTGTCCATTCCTCTC
CCGGAATGGGTGATAGAGATCGGAAAGAGCAACCCGGACATCTACTTCACTGACAGGGAA
GGAAGGCGAAACACAGAGTGCCTCTCGTGGGGCATCGATAAAGAAAGGGTTCTGCAGGGC
CGAACAGCCGTCGAGGTGTACTTTGACTTCATGAGAAGCTTCCGAGTAGAATTTGATGAG
TATTTCGAGGATGGGATCATTTCAGAAATCGAGGTTGGACTAGGGGCTTGTGGAGAGTTA
CGGTATCCATCTTATGCAGCAAATCATGGCTGGAAATACCCTGGCATTGGAGAATTTCAG
TGCTATGACAGGTACTTGCAGAAAAATCTGAGGAGGGCCGCAGAAGCACGAGGACACGCC
ATGTGGGCAAAGTCACCGGACAACGCAGGCCACTATAATTCTGAACCAAACAACACAGGA
TTTTTTCTGTGATGGAGGAGATTATGATAGCTATTATGGCCGCTTCTTCCTCAACTGGTA
TGCCCAGGTGTTGCTGGATCATGCAGACCGCGTGCTGATGC

Homology of Contig U35_10826 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os09g39570.1	534	1e-148	protein\|beta-amylase, putative, expressed
Brachypodium v1_2	Bradi4g38630.1	678	9e-153
Arabidopsis v10	AT4G00490.1	542	1e-121	\| Symbols: BAM2, BMY9 \| beta-amylase 2 \| chr4:222422-224862 FORWARD LENGTH=542