barSeed - Barley Seed Development Database

Probe CUST_11204_PI390587928

Source Contig U35_40788

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_11204_PI390587928	Hv_44K_v2	CTGAAGACAAATGGAATGCTCTGCGTTCATACAGGAGATCAAAGGGGCTTTGTTTCACTT	617	GeneList: darkolivegreen MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.376	0.624	0.933	1.349	0.962	1.942
Raw	13.359	32.839	45.438	104.578	25.735	57.287

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_76173.1	2637	7e-23	575 - 634	98	59 / 60	minus	None
MLOC	MLOC_76173.2	1542	7e-23	263 - 322	98	59 / 60	minus	None
MLOC	MLOC_76173.3	1327	7e-23	195 - 254	98	59 / 60	minus	None
JLOC1	JLOC1_50796.2	1753	4e-23	1193 - 1252	98	59 / 60	plus
JLOC1	JLOC1_50796.1	1630	4e-23	1070 - 1129	98	59 / 60	plus
Harvest35	U35_40788	677	3e-25	618 - 677	100	60 / 60	plus

Contig Sequence (677 bp)

>U35_40788 677 Hv_44K_v2
TGAAATTGCCTCGTTTCGACGGCGCGAACCCACGTCTATGGCAATCTCGATGCGAGCATT
ATTTCAAGCTCTAGGGTACCCCTGCATCGAGATGGATTTCGTTCGCCACTTCTCAGTTTG
AAGGCACAGCCACGCGATGGTTGGAAGCAGTGCAACGCCGTTCACCAAATTTGCTTTGGC
CAGAGTTCTGTCACTTGTTGATGCAGCGGTTTGGTCGCAACCAACAGCAATCTCTGGTTC
AGCAGATGTTCCGCATTGCTCAGGAGTCCACTGTGGCTGATTATGTGGAGCGTTTCAGGA
GTCTACTGTGGCTGATTATATGGAGCGTTCCGCTGAATTGTATGACCAACTCTCCGCTTG
TGCACAGATGCCTGATAGCTTGTATTACACTACTCGGTTCATTGATGGGTTGCGACCATG
GGTGCGTATGTCTGTGGCATTACACAAACCACAAGACCTAGATACTGCTTATGATCTGGC
ACTGCCCCATGAAGAATTGAGTGACACCGGTTAATTGAGTTTTCCTGCCAAAAAGTCCCT
ATCAACCACCAAATCTGCACCGGGTGCTCAGCTGGGCACTGATCGAAGGTTTGCTGAAGT
GGGTAAAACTGTTCCATCTGAAGACAAATGGAATGCTCTGCGTTCATACAGGAGATCAAA
GGGGCTTTGTTTCACTT

Homology of Contig U35_40788 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None