barSeed - Barley Seed Development Database

Probe CUST_11202_PI390587928

Source Contig U35_26496

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_11202_PI390587928	Hv_44K_v2	GTCATCGAAACATTGTACTGGCGTTAATATTTTTTAAGAAAGGAGGCAAAAGATTTGCCT	480	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK369097	1817	2e-24	1667 - 1726	100	60 / 60	plus	ABC20298 ABC23168
MLOC	MLOC_64461.1	1576	2e-24	56 - 115	100	60 / 60	minus	ABC20298 ABC23168
JLOC1	JLOC1_42331.2	1615	8e-25	1464 - 1523	100	60 / 60	plus
JLOC1	JLOC1_42331.1	1616	8e-25	1465 - 1524	100	60 / 60	plus
Harvest21	ABC23168	569	3e-25	481 - 540	100	60 / 60	plus	ABC23168
Harvest35	U35_26496	569	3e-25	481 - 540	100	60 / 60	plus

Contig Sequence (569 bp)

>U35_26496 569 Hv_44K_v2
CTTGCCGTCGGCTGCTGAAGAAATCGAATCTGATATTATTTCGCTAGCACAGTCAGAAGA
TTCAGATGTTTATGACATATATACTGTCAAGGAGGTGGATGATACGAACATGGAGTGCGC
ATCTGCAGCTGCATACCCACTGTTACAAGTGGACGATGAGGATGGCGAATGTTACGATGA
TGATGAGTATCCATATGATACTGATGATTCAAATGCTGAAGACAACCCACTCTATGATTA
TCCTGAAGAACAATCAGAGGATGAGGATGATAGCAGTGACGAGAATCCATTTGCAGATGT
GGATGGCTCTGGTTCCGAGTACGAGAATGAAGAGGTTGAAAAATCCAATGATGATGATGA
CGATGAAGAGTAGCGACATCAGAAAATCATGTTTTAGATGGGTGTAATATTTGACGATGA
AATTGGATGAGACAACCTCTTGCGTTGGTAACTCAGAGGAAATTCATCGCTAGTCCCACT
GTCATCGAAACATTGTACTGGCGTTAATATTTTTTAAGAAAGGAGGCAAAAGATTTGCCT
CATTCATTAATTAAAAAAAAAAAAAAAAA

Homology of Contig U35_26496 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None