barSeed - Barley Seed Development Database

Probe CUST_111_PI390587928

Source Contig U35_4816

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_111_PI390587928	Hv_44K_v2	GGTGCCAAAGCTGAAGACTAGTAGCCCTTCCAAATAAAATGAAAATAAATGAAGCTAAAA	1081	GeneList: red MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.140	1.655	1.438	0.848	0.234	0.174
Raw	713.338	1542.693	1199.639	1131.069	107.785	88.002

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_75464.3	2445	7e-23	2337 - 2393	100	57 / 57	plus	ABC12144 ABC12145
JLOC1	JLOC1_50343.1	1877	4e-23	1790 - 1846	100	57 / 57	plus
Harvest35	U35_4816	1154	3e-25	1082 - 1141	100	60 / 60	plus

Contig Sequence (1154 bp)

>U35_4816 1154 Hv_44K_v2
CTCCCGTACCTATGCTCCATCCTCGACTTCCACGCCAAGACAGGCTCGCCGTTCCTGGTG
AACGCGTACCCCTACTTCGCCTACTCCGACGATCCCAAGGGCATACACCTGGAGTACGCT
CTCCTCGAGCCGAGCTACCCCGGCGTCCCGGACGCCAACACCGGGCTCCACTACCCCAAC
CTGCTCGTGGCGCAGGTCGACGCCGCGTACCACGCCATCTCGGCGGCGAACAGCGCGGCG
GCGCGGGTGGTGGAGATACGGATCTCCGAGACGGGGTGGCCTTCCGCGGGGGACGCGAAC
GAGAAGGCCGCCACGCCGGAGAGCGCGGCTCGGTACAACAGCAACGTGATGCGGCTGGTG
GCGGAGTGGAAGGGCACGCCGCTCAAGCCCAACGTGCCGCTGCGCGTCTACGTGTTCGCG
CTCTTCAACGAGAACACCAAGCCCGGGCCGGCGTCCGAGCGCAACTACGGCCTGTTCAAG
CCCGACAGCACGCCGGTGTACCCGCTGACGTACAAGCCTGCGGGCGGCGGAATCGGCGGG
GGCAACAGCACCGGCGGAGACAACGACTACTACGACATCTCGGCTGCGTCGCGGGAGCCC
ACGGGTCGGCGGTGGACATGGGCGCAAGCTGCTGTGTCAGGAGGTGTTGCTGCCCTCATT
CATGGTTGCAGCCTGAGGTACTGAGATCATCATGGAGCGTGCCACTCTCTCTCGTCTTGA
TGGCTGAGATTCAGGGGTAGGTAGATAGGACGGAATGGAACTGCCTGCTCTGGAGCAATG
GTGTTGATGATGATCGTGATCCGCTGCGCGGCGCTCCTTTGCTGTTGTGGTTGCTCAAGA
CCGAGACCGAGACCGAGACGTGGATGTCTGATGAAACGATTAATTTGATGATGGCATCCG
AGCTATGTACTACACACTCTCTAGTTCCGATTCATCTTGGTGCCTTAAAAACCGCTGATC
GTTGGGACTAAAATAGACCCAGATCAGTCGGTTTTAATTGCCTTTTAATAGAAATGTTCT
CTTGAGTAGTACCCTAAAAAAAAAAAAAAACTGCTGTCTACAAATATACTGGATTTCATG
AGGTGCCAAAGCTGAAGACTAGTAGCCCTTCCAAATAAAATGAAAATAAATGAAGCTAAA
AAAAAAAAAAAAAA

Homology of Contig U35_4816 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os03g14210.1	431	3e-88	protein\|glycosyl hydrolases family 17, putative, expressed
Brachypodium v1_2	Bradi1g68450.1	432	8e-100
Arabidopsis v10	AT2G27500.1	392	2e-57	Glycosyl hydrolase superfamily protein \| chr2:11752364-11753844 REVERSE LENGTH=392