barSeed - Barley Seed Development Database

Probe CUST_11193_PI390587928

Source Contig U35_38478

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_11193_PI390587928	Hv_44K_v2	TGATTGCAAGCAGATTGAACATTACCTGAGCCCATCATTCCTGTCGAGATCCTCACTTTC	664	GeneList: darkorange MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.916	0.961	1.695	1.664	0.610	0.594
Raw	16.683	24.495	43.125	66.165	8.421	8.710

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK372023	3044	2e-24	1772 - 1831	100	60 / 60	plus	None
Harvest21	ABC34463	756	3e-25	665 - 724	100	60 / 60	plus
Harvest35	U35_38478	756	3e-25	665 - 724	100	60 / 60	plus

Contig Sequence (756 bp)

>U35_38478 756 Hv_44K_v2
TTGGGAGCAGGCTTTCGGATTACAAGGAAGGCCGTGCGCCTGGTGCTGGCATAGCTTTCG
TTGTGTTCAAGGATGTGTACACGGCAAACAAGGCTGTTAGGGATTTCCGGATGGAAAGGA
AGAAGACACCCATTGGCAGGTTCTTCCCAGTGATGGAGCTCCAGCTTGAGAGGAGCCGAT
GGAAAGTGGAGAGGGCGCCACCGGCATCAGATATCTACTGGAATCATCTTGGGATGAACA
AGACCTCACTAGCCTTGCGCCGGATTGCTGTCAACACCTGCCTCATCGTAATGCTCCTGT
TCTTTAGTTCACCCTTGTCAATACTCAGTGGAATGCAAAACGCAGCACGGATCATCAATG
TGGAGGCTATGGATAATGCCAAATCATGGATTGTTTGGCTTCAAGGCTCAAGCTGGTTCT
GGACAATAATCTTTCAGTTTCTACCCAATGTCCTCATCTTCGTGAGCATGTATATTATCA
TCCCATCAGTACTGTCGTACTTTTCCAAGTTTGAGTTCCATCTGACAGTGTCGGGAGAGC
AGAGAGCTGCATTGCTGAAGATGGTTTGCTTCTTCCTTGTTAATCTCATCTTGTTGCGTG
CGCTGGTGGAATCGTCGCTTGAAAGTTGGATTCTTAGCATGGGACGGTGCTACTTAGATA
GTGCTGATTGCAAGCAGATTGAACATTACCTGAGCCCATCATTCCTGTCGAGATCCTCAC
TTTCTTCCCTGGCATTCTTAATCACATGCACCTTTC

Homology of Contig U35_38478 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os03g04450.1	793	4e-140	protein\|expressed protein
Brachypodium v1_2	Bradi1g75920.1	796	1e-142
Arabidopsis v10	AT4G35870.1	817	3e-95	early-responsive to dehydration stress protein (ERD4) \| chr4:16990332-16992785 FORWARD LENGTH=817