barSeed - Barley Seed Development Database

Probe CUST_11181_PI390587928

Source Contig U35_38481

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_11181_PI390587928	Hv_44K_v2	ATACACTCCTTAATGCCTTTCAATGTCGTGCATGTTCCACTCAGGGACCAGAATTCCAAC	649	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_66855.1	1041	3e-21	282 - 341	97	59 / 61	minus	ABC33339
MLOC	MLOC_66855.2	1013	3e-21	276 - 335	97	59 / 61	minus	ABC33339
MLOC	MLOC_66855.3	1758	3e-21	276 - 335	97	59 / 61	minus	ABC33339
JLOC1	JLOC1_44101.1	1722	2e-21	1297 - 1356	97	59 / 61	plus
Harvest21	ABC34470	736	3e-25	650 - 709	100	60 / 60	plus
Harvest35	U35_38481	736	3e-25	650 - 709	100	60 / 60	plus

Contig Sequence (736 bp)

>U35_38481 736 Hv_44K_v2
GGAACTCTTCCGTAGTGTAGCACAGCACAGTACCACCAGCTCAACTCAAGGCGGCAGATC
CGTGCGGCCGGCAGCGTCCCCCACGCCATTCTCCGCCGACGAGAGCTCCGCCGCAGATTC
GCTCCCAATCTCTCCCGGATCTGCTGTCGAGATGGATAGAGAAGCCAAGAAAGAAGGTTT
CAGGAAGTACCTTGAGTCCAGCGGTGTGCTCGATACTCTCACCAAAGGTTTGGCGAAGTA
TATCTCGATAAATTGCGGTCACGCGCTGGCTACTTATGTCTACTTTCTATGATGTCCAGC
CCTTGTTTCTTTGTATGAGGAGAATGACAAGCCATCATCTGCAGTCGAGTTTGTTCAGCA
GAAATTGGGCGGTCCGTCGATTTCCGATTATGAAAAGCTCAAAGCCGAGAAGTTGGATTT
GCAACTGAAGTATAATGAGCTTTTAGAGACTCACAAGGAAACAAGTAGGCAGTTGGAGGA
ACTTAAGAATTTGAAGATTGACGCACCTTGGAATTAATGGAACCAACAGGTGTTGACATC
ATAGGTGCCACCAAGCAAATATATATGCCTCTTCAATATGGATCACCAAGTCATGTAAAA
AAGGATCATTTCTTGGCTAAACTTTGCCAACCATGTGATGTAATGCATTATACACTCCTT
AATGCCTTTCAATGTCGTGCATGTTCCACTCAGGGACCAGAATTCCAACACCTTCATGGG
CAAAGCTGAACTTAAG

Homology of Contig U35_38481 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value
Rice v7	None
Brachypodium v1_2	Bradi1g55150.1	103	7e-51
Arabidopsis v10	None