- Probe CUST_11178_PI390587928
- Source Contig U35_38484
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_11178_PI390587928 | Hv_44K_v2 | TTACCGCACAAAGAATATGCTAGAGGCAGTTACACGTGGCAAACTGGTAGTGACATCAAT | 577 | GeneList: blue MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 1.496 | 1.315 | 1.242 | 0.690 | 0.546 | 0.379 |
| Raw | 82.624 | 109.360 | 94.151 | 74.085 | 22.114 | 17.539 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_61578.5 | 3902 | 2e-24 | 574 - 633 | 100 | 60 / 60 | minus | ABC37269 |
| MLOC | MLOC_61578.8 | 3474 | 2e-24 | 433 - 492 | 100 | 60 / 60 | minus | ABC37269 |
| MLOC | MLOC_61578.6 | 3760 | 2e-24 | 433 - 492 | 100 | 60 / 60 | minus | ABC37269 |
| MLOC | MLOC_61578.7 | 3647 | 2e-24 | 431 - 490 | 100 | 60 / 60 | minus | ABC37269 |
| MLOC | MLOC_61578.2 | 4188 | 2e-24 | 685 - 744 | 100 | 60 / 60 | minus | ABC37269 |
| MLOC | MLOC_61578.3 | 3827 | 2e-24 | 679 - 738 | 100 | 60 / 60 | minus | ABC37269 |
| MLOC | MLOC_61578.4 | 3695 | 2e-24 | 679 - 738 | 100 | 60 / 60 | minus | ABC37269 |
| MLOC | MLOC_61576.1 | 7202 | 2e-24 | 144 - 203 | 100 | 60 / 60 | minus | ABC17285 ABC37269 |
| MLOC | MLOC_61578.1 | 8279 | 2e-24 | 1509 - 1568 | 100 | 60 / 60 | minus | ABC17285 ABC37269 |
| JLOC1 | JLOC1_40239.5 | 3773 | 8e-25 | 2988 - 3047 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_40239.4 | 3550 | 8e-25 | 2765 - 2824 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_40239.3 | 3781 | 8e-25 | 2996 - 3055 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_40239.2 | 3804 | 8e-25 | 3019 - 3078 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_40239.1 | 3034 | 8e-25 | 2249 - 2308 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC34475 | 637 | 3e-25 | 578 - 637 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_38484 | 637 | 3e-25 | 578 - 637 | 100 | 60 / 60 | plus |
Contig Sequence (637 bp)
>U35_38484 637 Hv_44K_v2 GGCCATCCAAGAAAAGACGGATTTTTATTAGGAGTTCAGAACTGCTAACGTATGCAAGGA GGGAGCGCTCCGATTGCAGATCAAATTGTTTGCTGTCTAGTATTCTCACACAATCATCAG CTGCTTCTCCTGTTCTTGATTCTTCATCTGGAGTTAACAGCAAAACTTCTGGTGTTAGTA GCTCTGATCAGCGACAAAAGAAACCATCTGGTGTTAAGGATGCAGGAAACTCACCAAAAT GTAACTCTCCAGTCCCGTGTAGTGGCCTGAAAACACCTTCTAAAGTGGTAAGCAAATTGT CACCTACTTTCAGTCCTCTAAATCCATCAAAAGCTTCAAGTAGGAGCCTGTTGAAACCCT CTATTGCCAGAGAGCTGCTGGAGTTAGATCCTGAAAATGCTCTACCAAGTCGATACCGAA AGGATTCTAGAAGAAAAGATATGACCAGTTGCAGTATTATTTTTAGCCATCATTTGGATG AGGATGTGATCAAGCGTCAGAAGAAGATCTTGGCACGCTTAGGAGCCCATGAAGCATATT CCATTGCAGATGCAACACATTTTGTGGCGGATGGTTCTTACCGCACAAAGAATATGCTAG AGGCAGTTACACGTGGCAAACTGGTAGTGACATCAAT
Homology of Contig U35_38484 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | LOC_Os05g05440.1 | 1465 | 1e-63 | protein|expressed protein |
| Brachypodium v1_2 | Bradi2g36210.1 | 1233 | 2e-89 | |
| Arabidopsis v10 | None |