barSeed - Barley Seed Development Database

Probe CUST_11169_PI390587928

Source Contig U35_38497

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_11169_PI390587928	Hv_44K_v2	ACCTGGTTTGCTACCAATTTTGGAAGCAACTAATCCTGAGTCATCTGTGATATAACCATG	595	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK355639	1128	2e-24	943 - 1002	100	60 / 60	plus	ABC10403 ABC10404 ABC21749
MLOC	MLOC_71682.6	1379	2e-24	253 - 312	100	60 / 60	minus	None
MLOC	MLOC_71682.5	2542	2e-24	334 - 393	100	60 / 60	minus	None
JLOC1	JLOC1_47656.3	767	8e-25	415 - 474	100	60 / 60	plus
JLOC1	JLOC1_47656.2	693	8e-25	341 - 400	100	60 / 60	plus
JLOC1	JLOC1_47656.1	1105	8e-25	753 - 812	100	60 / 60	plus
Harvest21	ABC34491	655	3e-25	596 - 655	100	60 / 60	plus
Harvest35	U35_38497	655	3e-25	596 - 655	100	60 / 60	plus
Harvest35	U35_33197	717	3e-25	131 - 190	100	60 / 60	minus

Contig Sequence (655 bp)

>U35_38497 655 Hv_44K_v2
GCACAGGACCACAACCATGTCCACCCCACCAAAGGAAAGCCGGCCAGCATCAAGGAATTC
TACGCTGTGATGTTGCCCTCACCCCCTCCCTCATGCAACTGGAACACGGGGTCAGCGGCA
CCGACGACCGGAGGCAGAGGGCGGTGTGCTCGCAGAGGTACATGAGGAGAGATGGCTAGG
GGGCGGGGAGCAAGAGGCCGGTCTCCGAGATCGATGCCGGGGTAGAAGAGGAGTGTGGGG
TCTGCATGGAGTTAAACAGCAGGGCTGTGCTGCCCAACTGCATCCACGATATGTGCATCA
AGTGCTCCCGTCAATGATATCGGCACCACGAAATGCACACTAGTCGGATCTGGCCTTGGC
ATTGGAAGATTCCGTGTCCAGCGAAGAAGCTCCACTGCTGCTTTTATCTGCAGTTTTCAC
ACACAAGATAATCATTCAGGCTACATGTGGTACAAAAAGAAGTCAATGCAAATGATATTT
ATACTACATAACCTGACCTCAGCATGCTATTCCAAGCTGGTGGAGGCATCATCTGACCGA
GTGCGAAGACAAGTTACCAGCAACAAATGCATAGAAGAAGAACGCACCAGCCGGTACCTG
GTTTGCTACCAATTTTGGAAGCAACTAATCCTGAGTCATCTGTGATATAACCATG

Homology of Contig U35_38497 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None