- Probe CUST_11165_PI390587928
- Source Contig U35_9402
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_11165_PI390587928 | Hv_44K_v2 | TGGTCACTGCCGAGTGCTGCTGATACTGGAGTACGTAATATTTTACTAGTCGCTAAAAAA | 465 | GeneList: darkgreen MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 0.623 | 1.436 | 2.262 | 1.650 | 0.709 | 0.537 |
| Raw | 415.407 | 1438.287 | 2010.850 | 2204.849 | 351.231 | 288.269 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_66780.1 | 1533 | 7e-23 | 11 - 67 | 100 | 57 / 57 | minus | None |
| JLOC1 | JLOC1_44044.1 | 1318 | 6e-21 | 1266 - 1318 | 100 | 53 / 53 | plus | |
| Harvest35 | U35_9402 | 536 | 3e-25 | 466 - 525 | 100 | 60 / 60 | plus |
Contig Sequence (536 bp)
>U35_9402 536 Hv_44K_v2 TCAAGCATGTCGCGCACATCGGCTGGGACGGCAGCACCAGCACCACCTCCAGCGTCCGCT CCTGGAACCGCGCCGCCCCTCCGCCTGGCACCACCGCTCCGGCCGCCGCGTCCGCGTCCA CCTCGGCCTCAGCCTCAGCCTCCTCCTCTTCTGCCGCTCCTCCACCGCCACAGGCGCAGC CGCCGTCGCTCTCCGCGCGGCAGTTCGAGCTCGCCATGGCCGCGCAGGCGTCCGCCGCGG CCACAACCAGCACGAGCGGCGCCGCCCGGCGCCACCGCCACTACAGCTAGCGCGGCCGCG CGCGTCACCAAGCGGGAGCGTGAATCTGGACGGTGGGTCGTGCCGTCGTCACGAGCCCTT GTCTCTTGCTCCCAAATTATCACCAGTTTCCCTTGTGTACGTAGCCATAGCGACATACCT TTTTTCCCGAGGATTTTTGTTCGGTTGCTGCTTGTTTTACATACATGGTCACTGCCGAGT GCTGCTGATACTGGAGTACGTAATATTTTACTAGTCGCTAAAAAAAAAAAAAAAAA
Homology of Contig U35_9402 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |