barSeed - Barley Seed Development Database

Probe CUST_11153_PI390587928

Source Contig U35_9415

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_11153_PI390587928	Hv_44K_v2	GATTTGTTGGTTATCCAAACGTTGGGAAGAGTTCCACGATAAATGCTTTGGTTGGCGAGA	1075	GeneList: skyblue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.586	0.779	1.831	1.655	0.951	1.014
Raw	8.810	16.698	37.153	54.196	10.441	12.768

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_74794.1	1946	2e-24	1134 - 1193	100	60 / 60	minus	ABC15173
JLOC1	JLOC1_49863.1	2186	8e-25	768 - 827	100	60 / 60	plus
Harvest21	ABC19318	1196	3e-25	1076 - 1135	100	60 / 60	plus
Harvest35	U35_9415	1196	3e-25	1076 - 1135	100	60 / 60	plus

Contig Sequence (1196 bp)

>U35_9415 1196 Hv_44K_v2
CTTCCTCCAGCTCTCGCCTCCTCCTCCACCCCCTGCTCCTCGCCAAAACCCTAGCGCTCC
GCCTCCAATCCGAGCTTCTCGCCGCCGGCCGACACCCCCGAAGGTTCCTGTGCCAGCGTA
GGCGCCTCCTATCTCGACGCGATGGCGGGCCGTGGGAAGAAGGGGGCGGAGGACCTGGGC
CGCGCGCTCATACGGCAGCAGAACAGGGCGGCCGCGGCCGCCAAGGAGCGGGGCGAGGCG
CTCGCCTCATCCCGACGCCGCGCGGCGCCCCTCGAGTCCGTCATCGACGTCAGCGAGATC
GACGCCGTCCTCCAGCGCGCCGCCGAGGAGGACCGCCTCCATTCCGCCCTCGCCGCCGCC
GCCTCCTCCGACCTCGTCATCGACCTGGACGCGACGGGCGAGACAGCCGAGGAGAGGCGG
AGGCTTCGGAAGGAGCAAGAGGCGCTGCACGCCAACAGCCTGGGTGTCCCGAGGCGCCCA
CCGTGGACTAATCGGATGACCGCGGAGGAGCTCGACACAAGCGAGAGGCAGGCGTTCCTT
GAGTGGCGGAGGAATCTTGCGAGATTGGAAGAGAATGACAAGCTTGTCCTTACACCTTTC
GAGAAGAACATTGACATCTGGAGACAGCTCTGGAGAGTAATTGAACGCAGCGATTTGCTG
GTCATGGTAGTTGATGCTCGAGATCCCTTATTCTACCGATGTCCTGATCTTGAGGTATAT
GCAAAAGAACTTGATGAACACAAGAGAACAATGCTCCTTGTCAACAAGGCTGATCTACTA
CCTTTAAATATCAGAAAAATATGGGCAGATTATTTCAAGGAGCACAATATTTTTCATGTT
TTCTGGTCTGCTAAAGCTGCTACTGCCACATTAGAAGGAAAAATGTCAAGTGGTGAAGAA
GATTCTGCTTCACCTGACATGGATACCAAGATATATGGCAGGGAAGAGCTTTTGATGAGG
TTGCAAGCTGAAGCCAAATCTATCGCAGCACAAAGAAGGACCTCAGCTAGTAAAGGGGAA
CGAGAAGCAAGTTCTACCGGTTCTGTTTCATCAGTGGGTAAGCATGTGGTTGCTGGATTT
GTTGGTTATCCAAACGTTGGGAAGAGTTCCACGATAAATGCTTTGGTTGGCGAGAAGAAG
ACCGGTGTTACTCACACGCCTGGCAAGACAAAACATTTCCAGACACTGATAATCTC

Homology of Contig U35_9415 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os12g42370.1	599	6e-160	protein\|GTPase of unknown function domain containing protein, putative, expressed
Brachypodium v1_2	Bradi4g01390.1	601	2e-171
Arabidopsis v10	AT2G27200.1	537	3e-117	P-loop containing nucleoside triphosphate hydrolases superfamily protein \| chr2:11625449-11627959 FORWARD LENGTH=537