barSeed - Barley Seed Development Database

Probe CUST_11140_PI390587928

Source Contig U35_9428

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_11140_PI390587928	Hv_44K_v2	GACAACCGGGACAACTACATGCAGACGGAGGCGTGCACGTACAACACCGTGCCCATGGTC	1088	GeneList: None MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.092	0.834	1.048	1.422	0.770	1.044
Raw	58.508	800.342	807.926	1688.819	327.343	489.549

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_66298.4	1685	7e-23	1355 - 1414	98	59 / 60	plus	ABC14370
MLOC	MLOC_66298.3	1146	7e-23	816 - 875	98	59 / 60	plus	ABC14370
MLOC	MLOC_66298.1	2329	7e-23	2005 - 2064	98	59 / 60	plus	ABC14370
JLOC1	JLOC1_43670.1	2273	4e-23	1915 - 1974	98	59 / 60	plus
Harvest21	ABC19889	1148	3e-25	1089 - 1148	100	60 / 60	plus
Harvest35	U35_9428	1148	3e-25	1089 - 1148	100	60 / 60	plus

Contig Sequence (1148 bp)

>U35_9428 1148 Hv_44K_v2
GCGAGCTCGCGCACGCGCTCGAGGCCATCAAGTGGGGCACCGACTACTTCATCAAGGCGC
ACACGCAGCCCGACGAGCTGTGGGCCGAGGTGGGAGACGGCGACACGGATCACTACTGCT
GGCAGCGGCCGGAGGACATGACGACGTCGCGGCAGGCGTACAAGGTCGACCGCGACCACC
CGGGCTCCGACGTCGCCGGCGAGACGGCCGCCGCCATGGCCGCCGCCTCCATGGTCTTCC
GCAAATCCAACCCGCACTACGCCCACCTCCTCCTCCACCACGCCCAGCAGTTGTTCGAGT
TCGCGGACGGGTACAGGGGCCAATACGACAGCAGCATAGCGGAGGTGAAGAGCTACTACG
CGTCGGTGAGCGGGTACAAGGACGAGCTGCTGTGGGCCGCCCTGTGGCTCCACCGCGCCA
CCGGCAAGGCCAGCTACCTCGACTACGTCGTCGACAACGCCCACGACTTCGGCGGCACCG
GCTGGGCCATCACCGAGTTCAGCTGGGACGTCAAGTACGCCGGCGTCCAGATCCTCGCCG
CAAGGCTGCTGCTGAGGGGAGAGCACACGGCGGAGCAGAAGAGGACGCTGGAGCAGTACC
AGGCCAAGGCGGAGCACTACGTGTGCGCGTGCCTGGGCCGGAACGCGGCCGGCGGCGAGG
ACGCCAACGTGGAGCGGAGCCCGGGAGGGATGCTCTACATCCGGCAGTGGAACAACATGC
AGTACGTGACCAACGCGGCGTTCCTGCTCTCCACCTACGCCGACTACCTGGCGGGGGCCG
GCGTGGGGACGGTGGCCTGCGCCGGCGGCGAGACGGCGGGCGCCGGCGAGGTGGCCGCGC
TGGCCAGGGCGCAGGTGGACTACGTGCTGGGCAGCAACCCGAGGGGGGTGAGCTACCTCG
TGGGGTACGGCGCCAAGTACCCCGCCAGGGTGCACCACCGCGCGGCATCCATCGTGCCCT
ACAAGCACAGCAAGCAGTTCATCGGGTGCACGCAGGGGTTCGACCACTGGTTCGGCCGCC
GGAGCTCCAACCCCAACGTGCTCGTCGGCGCCATCGTCGGCGGGCCCGACCGGAGGGACA
GGTTCAGGGACAACCGGGACAACTACATGCAGACGGAGGCGTGCACGTACAACACCGTGC
CCATGGTC

Homology of Contig U35_9428 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os02g50490.1	554	0.0	protein\|endoglucanase, putative, expressed
Brachypodium v1_2	Bradi3g59810.1	550	0.0
Arabidopsis v10	AT2G32990.1	525	1e-157	\| Symbols: AtGH9B8, GH9B8 \| glycosyl hydrolase 9B8 \| chr2:14003361-14005844 FORWARD LENGTH=525