barSeed - Barley Seed Development Database

Probe CUST_11138_PI390587928

Source Contig U35_9430

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_11138_PI390587928	Hv_44K_v2	CATACCTTTATGTAGAGCTGGATTTTCAGGAGGTAACCAGCAAAAGGCTGCCATCATCAC	447	GeneList: skyblue3 MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.165	1.103	1.119	0.800	0.464	0.367
Raw	218.640	290.858	285.563	293.965	66.395	56.339

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_13246.2	1516	3e-22	570 - 629	98	59 / 60	plus	ABC39632
MLOC	MLOC_13246.3	869	3e-22	243 - 302	98	59 / 60	plus	ABC39632
MLOC	MLOC_13246.1	1582	3e-22	594 - 653	98	59 / 60	plus	ABC39632
JLOC1	JLOC1_8944.2	1488	1e-22	458 - 517	98	59 / 60	plus
JLOC1	JLOC1_8944.1	1455	1e-22	402 - 461	98	59 / 60	plus
Harvest35	U35_9430	507	3e-25	448 - 507	100	60 / 60	plus

Contig Sequence (507 bp)

>U35_9430 507 Hv_44K_v2
GTGCAAGCACCGCACCGGCTCCGCCCTCCCTCCCACGGATCCCGGCGCCCCGTCCCCGAC
GCTCCCTGCCGCCGGCGCCCGCCCGATTCGCCGATCCGCGCACCGCCCGAATGGAGCCGG
CTGAGGCGGGAGGCGGCATCGCCGCCGCGAGGAGCAGCCCGGCCGCCGTGCAGGCCACCA
ACGACGACGCCGCCGCGAGCAAGCTGTCCTGCGTTACCAAAGGATACATGAAGGATGACT
ACGTGCACCACTTTGTTAGGAGGACGACAAAGAGAGCGCCCATAATCAATCGTGGCTACT
ATGCCCGCTGGTCTGTTCTCAGGAAGCTTATGCTCCAGTTCCTAAGTGCTGGGAATGGCA
GTAATGATCAGAAGAAGAAACAGATATTATCTCTTGGCGCTGGCTTTGACACGACATTTT
TCCAGTTGCAGGATGAAGGGCTTGCTCCATACCTTTATGTAGAGCTGGATTTTCAGGAGG
TAACCAGCAAAAGGCTGCCATCATCAC

Homology of Contig U35_9430 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os06g04820.1	341	4e-57	protein\|leucine carboxyl methyltransferase 1, putative, expressed
Brachypodium v1_2	Bradi1g51290.1	333	1e-59
Arabidopsis v10	None