barSeed - Barley Seed Development Database

Probe CUST_11134_PI390587928

Source Contig U35_9434

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_11134_PI390587928	Hv_44K_v2	AAGTCTTGCACATCCGTTTTAGAGTTTGAAGCATCTAGAGATGGGCTTTACTTTGTTTCT	679	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_55034.1	11285	7e-23	9739 - 9798	98	59 / 60	plus	ABC16764
MLOC	MLOC_55034.2	10833	7e-23	9290 - 9349	98	59 / 60	plus	ABC16764
JLOC1	JLOC1_35468.2	11184	4e-23	9583 - 9642	98	59 / 60	plus
JLOC1	JLOC1_35468.1	11304	4e-23	9703 - 9762	98	59 / 60	plus
Harvest21	ABC19102	742	3e-25	680 - 739	100	60 / 60	plus
Harvest35	U35_9434	742	3e-25	680 - 739	100	60 / 60	plus

Contig Sequence (742 bp)

>U35_9434 742 Hv_44K_v2
GTCTGCAGGCAATTCTGCACGAGGGCGATCCATGTGGAAAATAAGTTGGTCAATATATTC
TGAAAGGATTGCTCCTGCACTGATCCTACATTTAGACAAAGAAATTTGTGATTTGCTAGA
AACGAGTCAAGGAAGAAGAGAATCTGGTACACCTACTGCGGCTGTAGGAAGGGTTGCATT
AATGCTTGAGGAGTACTGTAATGCTCATGAGACAGCTAGGGCTGCCCGGACTGCAGTTTC
TCTGAAGCAAAGACAATTAAATGACCTCACTGAGGCTTTACGCAAAATAATTTTGGAAAT
AGTTCAGGTTGAATGGCTGCATGATTTTTCATCGCCTCATGCACAGAAGGCCAAGATTTT
CTCACAAAATATTCTTGGTGATGATAAGTTCATGTCCGTGCTTTTAAATCTGAGCAGAAG
GAACTTGTTAGATAAGATCCAGTCTTCGGTGTCATTGATAACAAGATCAATTGAGTGTCT
GCAAGCTTGTGAAAGCACTTCTGTTTCAGCTGAAGGCCAACTTGAGAGAGCAATGGGATG
GGCCTGTGCTGGTCCAAATACTTCTGGAGCAGGTGGTTCAACTGCAAAGGGTTCAGGAAT
CCCCCCTGAGTTTCATGATCATCTATTAAAAAGGAGGAAATTGCTTGGTGGCATTCAAGA
ACAGGCATCTGACCTTGTTAAGTCTTGCACATCCGTTTTAGAGTTTGAAGCATCTAGAGA
TGGGCTTTACTTTGTTTCTGAG

Homology of Contig U35_9434 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os03g52794.1	3787	4e-101	protein\|phosphatidylinositol kinase, putative, expressed
Brachypodium v1_2	Bradi1g09310.1	3630	6e-105
Arabidopsis v10	None