barSeed - Barley Seed Development Database

Probe CUST_11132_PI390587928

Source Contig U35_9436

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_11132_PI390587928	Hv_44K_v2	GTCCTTCGCACCGCCGACGCCTCCATCCTCCGCGTCTCCGCCACGCTCTCCTTCTCCGGC	354	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_52485.2	2907	2e-24	78 - 137	100	60 / 60	plus	ABC25397
MLOC	MLOC_52485.4	2305	2e-24	49 - 108	100	60 / 60	plus	ABC25397
MLOC	MLOC_52485.1	2677	2e-24	80 - 139	100	60 / 60	plus	ABC25397
MLOC	MLOC_52485.3	3587	2e-24	78 - 137	100	60 / 60	plus	ABC25397
JLOC1	JLOC1_33637.3	2950	8e-25	113 - 172	100	60 / 60	plus
JLOC1	JLOC1_33637.2	2790	8e-25	116 - 175	100	60 / 60	plus
JLOC1	JLOC1_33637.1	3113	8e-25	116 - 175	100	60 / 60	plus
Harvest21	ABC29780	427	3e-25	368 - 427	100	60 / 60	plus
Harvest35	U35_9436	414	3e-25	355 - 414	100	60 / 60	plus

Contig Sequence (414 bp)

>U35_9436 414 Hv_44K_v2
GTTGGCCTACTATCTGGTCTACACCAACAAGAGGGGAGAGGGGAAGGAAGGAAGGAAGGA
AGGAGATCTCAATTCCCGCTCCCCGCCCCACCAATGGCGCCGTCGCCGCCGCTCCTCCTC
CTCCTCCTCTTCCTGCTCCTGATCCGGGCGTCCGCCGCCGCGCCCCCTTCCTACTCCGCC
CACTGCGCCGCCCCGCCCGCCGTGCCGGACCTCCCCGCGGGCGCCGGCCACTCCTCCCCC
GCCCCGGCCCCCGCGCTCCAGCTCTCCTCCGGCTACTTCTCGGGCGGCGGGGACCGCCTC
TTCGGCCCGGACGCCGCCCGCCTCCCGCGCTCCTTCGCGCTGCTCCCCACCTCCGTCCTT
CGCACCGCCGACGCCTCCATCCTCCGCGTCTCCGCCACGCTCTCCTTCTCCGGC

Homology of Contig U35_9436 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None