barSeed - Barley Seed Development Database

Probe CUST_11126_PI390587928

Source Contig U35_9445

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_11126_PI390587928	Hv_44K_v2	TTAGCTTCTTATTAGCTAGCTACTCATGCACGAGCACAAACACAGTACGGGTGTGTAGCA	364	GeneList: lightgreen MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.419	0.350	0.310	2.655	7.862	16.471
Raw	2.778	2.670	2.960	78.767	70.451	162.214

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_57678.1	1515	2e-24	132 - 191	100	60 / 60	minus	ABC18657
JLOC1	JLOC1_37415.1	1475	8e-25	132 - 191	100	60 / 60	minus
Harvest21	ABC18657	552	3e-25	365 - 424	100	60 / 60	plus	ABC18657
Harvest35	U35_9445	552	3e-25	365 - 424	100	60 / 60	plus

Contig Sequence (552 bp)

>U35_9445 552 Hv_44K_v2
GCACAACTCGCTGCTCCAGGACAGGCTCAACGGCGTCCGCGCCAGGCATGGCTCGGCGGT
GAGGATCATGTACGCGGACTACTACGCCCACGCCGTCGACATGCTCCGTGACCCGGCGCG
CTTCGGCTTCACCACGGTGATCACGGCGTGCTGCGGCGCGGGCGGCGGCCCGTACAACTA
CGAGTTCGACGCGCGGTGCGGGATGAAGGGCGCGACCGCGTGTGCCGACCCGTGGAGGCA
TGAGTCATGGGACGGCGTGCATCCGACGGAGGCGGTGAACAAGCTCGTCGCCGACGGGTG
GCTCAGGGGACCATACTGTCACCCTCCCATCCTGCAGTAACGGATCACCGATCGACGACA
TGATTTAGCTTCTTATTAGCTAGCTACTCATGCACGAGCACAAACACAGTACGGGTGTGT
AGCAGCAGTACGAGGATGCGGGGAAACGTGGTGTTTTAGAGCATCTCCATCAGTCGGGTA
AGCGTGGTTCGTAAAAAAAGCCTTTACGGTGTCGAAATAGTCGGTTTTTGCTCGTAAAAA
AAAAAAAAAAAA

Homology of Contig U35_9445 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os06g06260.1	405	8e-52	protein\|GDSL-like lipase/acylhydrolase, putative, expressed
Brachypodium v1_2	None
Arabidopsis v10	None