barSeed - Barley Seed Development Database

Probe CUST_11114_PI390587928

Source Contig U35_9458

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_11114_PI390587928	Hv_44K_v2	ATGGCCTGGTACTCGTCTTCAACGAACCTAAGAACCAGATCCTGGTGTGGGACCCCGTCA	361	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK375286	1435	2e-24	353 - 412	100	60 / 60	plus	ABC34609
Harvest21	ABC40878	480	3e-25	362 - 421	100	60 / 60	plus
Harvest21	ABC18971	502	3e-25	359 - 418	100	60 / 60	plus
Harvest35	U35_9458	505	3e-25	362 - 421	100	60 / 60	plus

Contig Sequence (505 bp)

>U35_9458 505 Hv_44K_v2
AGCAGTGAGGAGGGCGAGATGGCGAGCCGCCGCCGCCGCCGCCACCCCTGCTCGCCGGCG
GTCGGGCCACTGGAAGACGACGACCTGCTCATCGAGATCCTCGTCCGCCTGCCCCCGCAG
CCCTCCTCCCTCCCCCGCGCCTCCGCCGTCTGCAGGCGCTGGCGCCTCCTCCTCTCCGAC
CCAGGATTCTCCCGCCGCTTCCGCATCCACCACCGCCGCAACCCTCCCCTCCTCGGTTTC
TTCGTCGGAAATGAAGATCTGCCGTTCCGACCTACTCTCGACGCCCCCGATCGTGTCTCC
CCCGGCCGTTTCTCCTTGCAGCGCGGCGACGGCGACCGGTTCATGCCCCTTGGATGCCGC
CATGGCCTGGTACTCGTCTTCAACGAACCTAAGAACCAGATCCTGGTGTGGGACCCCGTC
ACCGGCGACCAGCACTGCGTTGACGTCCCCCCGGTGGTTGCGATACATGCGAAGAAGACA
AGGATGAACGGGGCGGTGCTTCGTG

Homology of Contig U35_9458 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None