barSeed - Barley Seed Development Database

Probe CUST_11113_PI390587928

Source Contig U35_9459

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_11113_PI390587928	Hv_44K_v2	GTGTTCACTGTCGTGCTTGATCGATTCAATTGGAATGTTCAATATATCATATTGAGATGA	549	GeneList: orangered4 MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	2.543	2.989	1.127	0.722	0.225	0.341
Raw	106.202	211.459	64.246	70.148	6.938	11.603

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK360520	1634	2e-24	1541 - 1600	100	60 / 60	plus	ABC35300
MLOC	MLOC_80598.1	644	2e-24	567 - 626	100	60 / 60	plus	ABC35300
JLOC1	JLOC1_53667.1	644	8e-25	559 - 618	100	60 / 60	plus
Harvest21	ABC35300	625	3e-25	550 - 609	100	60 / 60	plus	ABC35300
Harvest35	U35_9459	665	3e-25	550 - 609	100	60 / 60	plus

Contig Sequence (665 bp)

>U35_9459 665 Hv_44K_v2
GGCCTGCAGGGCGCGGCCCCGTCGACGCGCTCGGCTACCGTCTCGAGCTGGTCTTCGACT
CGGGCCCCGTCGAGTGCGCCGTCCCCATCGCCGAGTCGTCCATCAGCGCCAAGCGCGGCG
GCCAGTTCGTGATCGACCCGGCCACGTTCCCCGAGGGCTCCGCCGGCGCCGCGTGGCCGT
TCGCCGGCGGGTTCGTGATGGGCTCGACGGTGGAGGGCGAGGGGAAGGCCAGCCGGCCCA
CCGTGCAGGTCGGCGTGCAGCACGTGGCGTGCATGGGCGACGTGGCCGTGTTCGTCGCGC
TGTCGGCCGCCGTCGATCTCTGCATGGACGCGTGCAAGCTCTTCTCGCACAGGCTCAGGA
AGGAGCTGTGCCAGGACCAAGACGACTAGTTTGGTCTTGGGCTTGAGTCTTGTGAAAGTG
ATGGCCTGTGGCTCTTCTTTTAGTTTAGGCTGGGTCGGATCACAAGAACAGATCGAATGA
GTGTGTGTTTATTCTTTCGTTGCGATATTCTTTCGATTCTTTGTAGCATAGGTCGTCTAT
GCAGCTCTAGTGTTCACTGTCGTGCTTGATCGATTCAATTGGAATGTTCAATATATCATA
TTGAGATGAATATTCAGAAACAATTAGTACTTGATTATTGATCACTATAAAAAAAAAAAA
AAAAA

Homology of Contig U35_9459 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g53790.1	447	1e-73	protein\|stress-induced protein, putative, expressed
Brachypodium v1_2	Bradi2g49350.1	451	2e-78
Arabidopsis v10	None