barSeed - Barley Seed Development Database

Probe CUST_11109_PI390587928

Source Contig U35_9464

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_11109_PI390587928	Hv_44K_v2	CACTTCAAGAGAGTGAGCAACCACACAAAAAAGGAACCCTCGCGAAGATTAAAAGGGAGA	612	GeneList: turquoise MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.303	1.446	1.249	0.896	0.335	0.333
Raw	90.603	158.145	120.153	138.960	17.710	19.356

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_7704.2	2786	2e-24	1987 - 2046	100	60 / 60	plus	ABC24609
MLOC	MLOC_7704.1	2794	2e-24	2021 - 2080	100	60 / 60	plus	ABC24609
JLOC1	JLOC1_5091.1	2681	8e-25	1908 - 1967	100	60 / 60	plus
Harvest21	ABC20558	672	3e-25	613 - 672	100	60 / 60	plus
Harvest35	U35_9464	672	3e-25	613 - 672	100	60 / 60	plus

Contig Sequence (672 bp)

>U35_9464 672 Hv_44K_v2
GCTTATGTCGAAAGAATACTGTCCAAAGCACAACCACCGCGCAAGAGGTGGTAAAACTTG
CTGTCCATCTTATGACAACTCCAGATGACATGATTCTTGTGCATGAGATGACAACAGAGT
TGAAGAAATTAATAGCCTCTGGAGACGAGGACTCTGTAGATTCTTCCGAGGCATTTCTCA
TTATCAATTGTAAAACAAAATGTTCACTTGTTGCTGTCTTCCTTCATATGGTTGAGTCAT
CTCTCATTGAACTGGAATGGGGTCTTGGTAGGCTTAAGGCAATGCTCACATTAGGTTATG
GTTCTTCTAATGTCGACGAGGATCAGCCAGCAGATGAAAGGACACAAAGAATGTTGTTGG
AGGAAGCACTCTATTCAAGATCAACATCAGTAGTTCATGTCCTTTCGTCTTTCACACATA
TGAGCCTTAAGGATTCTCAGGCAGAACAGTTTCTGAAACTGACTGCAAAGTTCTACAAGC
TCTTGGCTCGTATGTCGAAGTCTCAGATTGCACCTAAGGGCTACAAGCAGTTCATACCAG
ATCTCAAATTTCAGAAAATGGCGGAAGTAACTTGCAGGATGCTTACTGTTCCACTTTACA
ATTTTGTCTTTACACTTCAAGAGAGTGAGCAACCACACAAAAAAGGAACCCTCGCGAAGA
TTAAAAGGGAGA

Homology of Contig U35_9464 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os03g22190.1	1572	4e-99	protein\|expressed protein
Brachypodium v1_2	Bradi1g62920.1	1253	2e-115
Arabidopsis v10	None