barSeed - Barley Seed Development Database

Probe CUST_11098_PI390587928

Source Contig U35_9477

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_11098_PI390587928	Hv_44K_v2	AGGAGCTCGGAATCGATGATGATATGTTAGTTGCACTGGATTTATCTGCCAATTTTCCGA	561	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK364799	2882	2e-24	570 - 629	100	60 / 60	plus	ABC18021
MLOC	MLOC_606.1	1731	2e-24	709 - 768	100	60 / 60	plus	None
JLOC1	JLOC1_369.1	1621	8e-25	598 - 657	100	60 / 60	plus
Harvest21	ABC46694	575	3e-25	516 - 575	100	60 / 60	plus
Harvest35	U35_9477	621	3e-25	562 - 621	100	60 / 60	plus

Contig Sequence (621 bp)

>U35_9477 621 Hv_44K_v2
AAGAAACATCTAAACCCTCCTTCTCCCCCCAACCGCCGCCGCCGCGGTGAACTATCGCGA
TGTCGCCCGCTGCCGCCGCCCCCGCGCCACGCGATGACCGCATCCGCAGCTTCGAGGACT
TCGCGAGGGTGCACCAGTTCCTGCTGATTGCGGCCGGCGTGCCGCCGTCGCTGCATCGGC
GGCTGTACCGCAAGCTCGCCGACGAGGTGTTCGACGGCGGGGAGAGCTTCTCCGTCGAGC
CCTGCGAGGAAGGGAGGCAGCGCCGCCTCGTGCTCGCCTCCGGGGCGCCTCTTGGGAGCG
AGGCGGACGTCTTCCTCGTCGACCACGCGTGGTCCTTCCGCCTCTCCGATGCGCTCAAGC
AGCTACGTGAAGTACCAGGATTGGCCGAGAGAATGGCAGCTCTAATGTGCGTGGATCTGG
ATAGGAGAATTGAGGTCGAAGAGGCAGATGAGCAAGACAGTGAAAAGGGTGGTGGTTTGG
AGCATGTCTTGAAGGTTGTGGAGAAAGAAAGGATTAGAATCCAGGAGTCGGGAGGTGATT
TTGCAGCATGGCTGGAGCTTGAGGAGCTCGGAATCGATGATGATATGTTAGTTGCACTGG
ATTTATCTGCCAATTTTCCGA

Homology of Contig U35_9477 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os03g08140.2	786	2e-93	protein\|tubulin--tyrosine ligase-like protein 12, putative, expressed
Brachypodium v1_2	Bradi1g72750.1	873	1e-97
Arabidopsis v10	None