- Probe CUST_11086_PI390587928
- Source Contig U35_7659
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_11086_PI390587928 | Hv_44K_v2 | GGAAGAAGGTGACAAGGTTGTTGCAAGAAAGGCAAGCTATATATATGTAAGCTAATTATT | 393 | GeneList: paleturquoise MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 32.454 | 7.968 | 1.268 | 0.710 | 0.916 | 0.939 |
| Raw | 238.524 | 94.579 | 13.057 | 10.631 | 3.506 | 5.809 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | AK356482 | 1154 | 2e-24 | 1078 - 1137 | 100 | 60 / 60 | plus | ABC15697 |
| MLOC | MLOC_72957.1 | 940 | 2e-24 | 233 - 292 | 100 | 60 / 60 | minus | ABC15697 |
| JLOC1 | JLOC1_48558.1 | 724 | 8e-25 | 39 - 98 | 100 | 60 / 60 | minus | |
| Harvest21 | ABC15697 | 486 | 3e-25 | 35 - 94 | 100 | 60 / 60 | minus | ABC15697 |
| Harvest35 | U35_7659 | 487 | 3e-25 | 394 - 453 | 100 | 60 / 60 | plus |
Contig Sequence (487 bp)
>U35_7659 487 Hv_44K_v2 CGGCATATGACGTGCGCGCATGCGGTCGATGGACGAGTTTTTTCTTGTTGATCGTCGTCT CGTCCATGCATGCTTTCCCCGTGACCCTACGTACGTACGTGGTGCCAACGTCTTCTTCCC CGGCCGGCCGGCTGATGACCTGACGTCCGTGCATGGAATGTGCATGCCCCGCCGTCCGTG TGCGTCTCTCTTCTTCCCTAGTTGATTCTCTGCTGCTTAATTCTCACTCTCTCTCTATAC TGCTATCACTAGTCTTTGCATCATGCATGCATGCCACGCTGATGTAACATTGGCCAGCTG CTGCTGCATGCATGCTATAGTAGTATTTTTACTCGTGCCATATTATTGTAAGGTTACCAG TAGCACGTACCTACTAGTACTTGATTGGGAGGTGGAAGAAGGTGACAAGGTTGTTGCAAG AAAGGCAAGCTATATATATGTAAGCTAATTATTAATTTGAGTTTCCATGCAAAAAAAAAA AAAAAAA
Homology of Contig U35_7659 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |