barSeed - Barley Seed Development Database

Probe CUST_11084_PI390587928

Source Contig U35_7661

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_11084_PI390587928	Hv_44K_v2	GCCATCATGATTTGAATGGTTCCTGAGCCTGTTATGGACTTATGCTTCATACTGTAGTTT	1367	GeneList: turquoise MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.781	1.615	1.275	1.029	0.371	0.272
Raw	1343.786	1935.216	1334.947	1654.690	215.723	169.673

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_65221.1	1944	9e-22	1823 - 1884	97	60 / 62	plus	ABC16198
JLOC1	JLOC1_42907.1	1931	5e-22	1789 - 1850	97	60 / 62	plus
Harvest21	ABC16198	1435	3e-25	1368 - 1427	100	60 / 60	plus	ABC16198
Harvest35	U35_7661	1435	3e-25	1368 - 1427	100	60 / 60	plus

Contig Sequence (1435 bp)

>U35_7661 1435 Hv_44K_v2
GCGAGGCTTGGTCCTACGTCGCCTCGCTTGACGAGAATGTCTCTGAAGGCGTCGGTGCGA
ACTTCACGCTCTCAATCGCGCACCACGGCGACCTCGAGTCGCCGGAGTTCTGGCAGGGCT
TGCCCGAGCAGTCCAAGAACTTGGCGTACAGGCTCGCCACTGCGCGGTGTGAGCTCTCTC
GGGCTGTCGTTGTGTGCCACAGCGAGCCTGGCGCGTGGTACCCGCCGATGTACGAGTCTC
TGCCTTGCCCGCCTACCGGATACGACGAGCCGGCGTTCGTCATTGGCCGGACGATGTTCG
AGACTGACCGTGTCTCGCCGGAGCATGTCAGGCGCTGTAACCAGATGGATGCTGTCTGGG
TACCGACAGAGTTCCACGTCTCCACATTCGTGAAGAGCGGGGTCGATCCCTCCAAGGTCG
TCAAGGTAGTGCAGGCCGTCGATGTCACGTTCTTTGATCCGGCCAAGCACGTCGCCTTTC
CTCTTCCGATTGGTTTCTCTGTCATGGCGCCCGATGATTCTACATGGAATCCTGATAGCT
CCAAAGGCAAAGGTTTTGTGTTTCTTAGTGTGTTCAAATGGGAGCAGAGGAAGGGCTGGG
ATGTGCTTCTGACAGCCTATCTGCAGGAGTTCTCTGGAGCTGATGATGTTGTACTCTACC
TACTGACCAATGCTTACCACTCTGACACTGATTTTGGAGGGAAAATCCACAGATTTATGA
ACAAATCCAGCATTGAGGAGCCAGTGCTAGGATGGGCAGAAGTCCGGGTGGTTGATGAGC
ATGTCCCACAGTCCGACCTTCCAAGGTTGTACAAGGCTGCAGATGCATTTGTGCTACCTT
CCCGTGGCGAGGGGTGGGGAAGGCCGGTGGTCGAAGCCATGGCCATGGAACTGCCAGTTA
TTGTGACAAATTGGTCAGGCTCAACAGAGTACCTGACTGAAGAGAATGGGTACCCACTGG
ACGTGGACAGGCTGACTGAGGTCACAGAAGGGCCATTCAAGGGTCATCTCTGCGCTGAGC
CATCAGTTGATCATCTGAGAGCTTTGATGAGGCGTGTCTTTGGTGATCAGGAGGAGGCGA
GGAGAAAAGGGAGGAAGGCAAGGGAAGACATGGTCGAGAGGTTTTCGCCAGAGGTTGTGG
CAAGGATTGTTGCTGATCAGATACAACAGGTGGTTGTCAGTACTTAGTAGATGGATAACC
GAAATCTGATCACAAATTTCAAAGGAAAGCAGATATCATACACCACACATATGATGTAGC
CATGTAGGTATGGTAAGCTTGTTAGTCATTTGCTGCTTCGTAGGAGTTATTTGTAGTAGT
TTCTGCAATGGTGGGGATAATTGGTGGCTGTTGTTCATGTGCCTTATGCCATCATGATTT
GAATGGTTCCTGAGCCTGTTATGGACTTATGCTTCATACTGTAGTTTTTTTCAAC

Homology of Contig U35_7661 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os09g12530.1	488	0.0	protein\|glycosyl transferase, group 1 domain containing protein, expressed
Brachypodium v1_2	Bradi4g27470.1	496	0.0
Arabidopsis v10	AT3G10630.1	487	1e-157	UDP-Glycosyltransferase superfamily protein \| chr3:3321722-3323185 REVERSE LENGTH=487