barSeed - Barley Seed Development Database

Probe CUST_11083_PI390587928

Source Contig U35_7662

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_11083_PI390587928	Hv_44K_v2	TGGATCAAACCACGCGAAGAGGGCCCTAAGTCTTGTTTATCAAAGCCTTCCTATGATTCT	1212	GeneList: green MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.183	1.063	1.473	1.211	0.449	0.489
Raw	89.225	122.093	154.658	208.938	26.890	30.697

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_60893.2	3120	2e-24	2362 - 2421	100	60 / 60	plus	ABC25896
MLOC	MLOC_60893.1	3114	2e-24	2360 - 2419	100	60 / 60	plus	ABC25896
JLOC1	JLOC1_39745.1	3134	8e-25	2358 - 2417	100	60 / 60	plus
Harvest21	ABC16260	1340	3e-25	1213 - 1272	100	60 / 60	plus
Harvest35	U35_7662	1341	3e-25	1213 - 1272	100	60 / 60	plus

Contig Sequence (1341 bp)

>U35_7662 1341 Hv_44K_v2
TGAACAATGATGNNACTCGTGCCTTGCATATATATTAGGAGCCATTTCCAATCTATTATC
AAAGATAGGTATATCAAGCACAGTTGGATTAATTGGTTCTCGATATTCACTTGGAAACAA
TATTGGACTGGGCACACCATTGTCCATTCAGCAGCAGTTGCTTGTTCTTTTGAAGCGATC
CCTTAAGAGAGCTGATATGCTGAAACTTACAAGCTTACTATCCTTTGATCACATCTCTCT
TGCAAAATTTGATTTGAAGCATGTCCAAAGGCCGTTGGTGTCCTTTGGCCCTAATGGTTC
TACAAAGCTTAGAACCTGTCCTGCAGATGTCTGCAAGAATTTAAGATTAAGTTCCCATGT
GCTGTCCGACTTCGGCACAGATAGCTTATCAATTTCGAATGATAATGGTAGTTTCAGTAC
CTCATGGCTTAGGAATCTGTCTGATGCTTCCAGATCTTGGTCTAATAGCTCAGCAAAGAC
TAGAAAACTTATTGCAAATGACTTTGACAATTTCCACTTTCATGCACAACCAAGTCCAAT
ACCTACATCAGTATTGCAATTAGCCGGCTCAGCACATTTGATGAGGGCCACTGCCTGGGA
GCACTATGGAAGTGCTCAGATGGTTCGAATGAATACGCTGGTCTATGCAACCTGCTTTGC
TGATGCTGCAAGTTCATCGGAGCTGTCACTGGCATATGTCAAGCTAATTGAACAGTTAGC
AGTCTTCAAAGGATGTTCAGCGGCATTCTGTGCGCTCAAGCTTGCCGAAGAGAAGTTCCC
ATCCTCGATGAATTCACAGATCCACCTTCTCAAAATGCAATTGCTACATGAGCGTGCCTT
GCATCGAGGACACCTGAGAATTGCGCAACAAATCTGTGATGAATTTGGGGTGCTCTCATC
TTCTGTCAGTGGAGTAGACATTGAGCTAAAGACTGAAGCTAGTCTACGGCGTGCCCGCAC
GTTACTCGCTGCAAAAGAGTTTAGCCAGGCAGCAGCTGTGGCGAATTCCCTTTTCACTAC
ATGCCACAAGTACAACATGCAAGTAGAGAATGCAAGTGTCCTTTTGTTACTTGCCGAAAT
ACATAGAAAGTCCGACAACGCGGTCCTTGGTCTCCCTTACGCATTAGCCAGCCAATCGTT
TTGCAAATCGTTTAATTTGGATCTGCTTGAAGCTTCGGCCACACTTACTCTCGCTGAACT
GTGGCTAGCTCTTGGATCAAACCACGCGAAGAGGGCCCTAAGTCTTGTTTATCAAAGCCT
TCCTATGATTCTCGGCCATGGCGGTCTTGAGCTGCGTGCTTGGTCTCAGTTAGTCTTAGC
AAAATGCCATTTAACTGATCC

Homology of Contig U35_7662 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os12g43120.2	784	0.0	protein\|expressed protein
Brachypodium v1_2	Bradi4g01090.1	913	0.0
Arabidopsis v10	AT1G06590.1	916	6e-136	unknown protein; Has 380 Blast hits to 268 proteins in 109 species: Archae - 0; Bacteria - 0; Metazoa - 245; Fungi - 73; Plants - 49; Viruses - 0; Other Eukaryotes - 13 (source: NCBI BLink). \| chr1:2016504-2024505 REVERSE LENGTH=916