barSeed - Barley Seed Development Database

Probe CUST_11076_PI390587928

Source Contig U35_7670

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_11076_PI390587928	Hv_44K_v2	GCAGTTTGAGGAAGCCCAAATTGTGTGAAAATATATATACATTTCTGTCGTCTGTAAAGA	715	GeneList: darkgrey MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.223	0.366	1.276	1.788	1.047	0.921
Raw	67.248	172.756	544.629	1138.299	243.085	234.910

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK368929	2918	2e-24	2824 - 2883	100	60 / 60	plus	ABC18728
MLOC	AK362066	2833	2e-24	2671 - 2730	100	60 / 60	plus	ABC18728
MLOC	MLOC_17942.1	1761	7e-23	111 - 170	98	59 / 60	minus	ABC18728
JLOC1	JLOC1_12401.1	1892	4e-23	1648 - 1707	98	59 / 60	plus
Harvest21	ABC18728	779	3e-25	668 - 727	100	60 / 60	plus	ABC18728
Harvest35	U35_7670	827	3e-25	716 - 775	100	60 / 60	plus

Contig Sequence (827 bp)

>U35_7670 827 Hv_44K_v2
CTCCACCGGGACTCAAGGCTACGTATTGTTCATCGTGATCTCAAGGCCAGCAACATTCTC
CTAGACACAGACATGAACCCCAAAATATCAGATTTCGGAATGGCAAGGATCTTTGGAGGG
GATGAAAACCAGTTCAACACAAACCGTGTCGTTGGAACATTCGGCTACATGTCTCCTGAG
TATGCCATGGAAGGCATTTTCTCCGTCAAGTCGGATGTCTATAGCTTTGGAGTTCTGATC
TTGGAGATCATCACAGGGAAGAGGGCTGTCAGCTTTCATGGCCAGCAGGACTCCCTAAAC
ATCGCGGGATATGCATGGCAACAATGGAATGAAGACAAGGGCGAGGAAATGATCGACCCG
TTGATAAAACCATCATGCTCGATTCGACAAGTCTTGAGGTGCATCCACATTGCATTGTTA
TGCGTGCAAGATCATGCCCAAGAGCGTCCGGACGTCCCCGCGGTCATCCTGATGTTGAGC
AGTGACAGCTCCAGCCTTCCCATGCCGAGGGCGCCCACCCTGATGCTCCGAGGCCGTGCT
CTCGAGTTGAGCAAATCAAGCGAGAACGAGAGGAGCCACTCCATTGGTACCGTGTCAATG
ACACAGCTGCATGGAAGATAGCATGGCAGGGGCAGTATATACTGAAGATATCATGTCTTT
CTTTTTGTCAAGTTTTATGTTGCAATGCTGGTGTTTTCTGTAGATTAGGGTCTGGGCAGT
TTGAGGAAGCCCAAATTGTGTGAAAATATATATACATTTCTGTCGTCTGTAAAGATGAAT
GATGGTCCATTGTCAAGTTTAGTTAAGGCTAAAAAAAAAAAAAAAAA

Homology of Contig U35_7670 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os07g36590.1	854	1e-114	protein\|serine/threonine-protein kinase receptor precursor, putative, expressed
Brachypodium v1_2	Bradi1g25180.1	848	1e-114
Arabidopsis v10	AT4G21390.1	849	6e-66	\| Symbols: B120 \| S-locus lectin protein kinase family protein \| chr4:11394458-11397474 REVERSE LENGTH=849