barSeed - Barley Seed Development Database

Probe CUST_11073_PI390587928

Source Contig U35_7673

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_11073_PI390587928	Hv_44K_v2	ACGAGTAAGTCTGCAAGATATGCAATGTTTCCATGAGACTCGAGCTTCGGTGTTGGAATT	1067	GeneList: yellow MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.825	1.591	1.113	0.827	0.378	0.460
Raw	3551.007	4855.207	2966.323	3449.213	558.019	738.653

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK367048	1183	7e-23	1060 - 1119	98	59 / 60	plus	ABC16005
MLOC	MLOC_57192.1	586	7e-23	97 - 156	98	59 / 60	minus	ABC16005
JLOC1	JLOC1_37021.1	797	4e-23	566 - 625	98	59 / 60	plus
Harvest21	ABC16005	1171	3e-25	1068 - 1127	100	60 / 60	plus	ABC16005
Harvest35	U35_7673	1171	3e-25	1068 - 1127	100	60 / 60	plus

Contig Sequence (1171 bp)

>U35_7673 1171 Hv_44K_v2
GGAACATCGAAGGAAACCCTAACTGGGAACGGCACCGCGAAAGTTAGGCACCAAGCCCAA
ACCCGTACCCCCAACATGGCGCCGCCGTCGCAGGCGGCCACCGGCAAGCGGAAGAAGCAG
CACAAACCCACCAAGAGCCTCGCCGTGAAATCAACCAATCCCGTCTCGAAGAAGACGCAC
AAGCAGAAGAAGCCGCGGCCACCCGCTGAGCAGGACCAAACCAACGCCGTCGCCGCCGCA
GGTGAACCCGCGGGCGGTGGCGTCCTCTTGTCGGCCGCGCTGCCGCCGGCGCGGCAACTC
GAGTTCCTCCTCCGCAGCTTCGAGCGCGCCGCCAAGATGCGCCTCTCCCCACTCGAACTC
GGCGCCTACTCTGAGGCGTGCATGGTGCAGCTCGCCGAGGGGGCGAGCCAGGACGTGGAG
AGCTTTGGTGACCATGTGAAGGGGGCCTTTGGAGCGATGTGGAAGGGGGAGCTCTGTGAG
GGGAGACTCGTTGAGGGGTCGATCGATGCGGGCAGCCCAGCGCTGCTGGTTATCAGCTTG
GGTGCACTGAGATCACTGGACCTTCTGAGGGGGTTAAAGATGTTTACTAGAGGATGCCGT
TCAGTAAAGCTCTTCGCCAAACACATGAAAGCGGAGGAGCAGGTTGCGCTACTAAAAGAT
CGAGTTAATATAGCCTGTGGTACACCCAGCAGAATCAAGAAACTAATTGACATGGAAGCT
TTATCACTGTCACGCTTGAAATTGGTGGTGCTCGACATGCAGAGGGACCCGAAGTCATTT
AATTTGTTTACGCTACCGCAAGTCAGCAATGAGTTCTGGGACCTGTACAAGGGGTATCTT
GATGAGAAAGTTAGAGGAGGCGATACAAGAATATGCTTTTATGGTGCTGTTTCTGAGAAA
GACGCCAATAAAGTCCTCACACCTGCCGAGTAAATGTATACCATGAAGTAGTGTCCCAGT
TACACTAATCAATTGTAGTTGGCGGCAAGATATTAGGAATTTTGGTCGGGTGAGAAAATT
AGGAGTTTTGGTTGTGATTTTCCAATGTACCTTTGCACTCCCGCTGAACGAGTAAGTCTG
CAAGATATGCAATGTTTCCATGAGACTCGAGCTTCGGTGTTGGAATTCCCCCCCAGTCAT
GAAAAAAAGCTGGGAAAAAAAAAAAAAAAAA

Homology of Contig U35_7673 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os04g28060.1	284	3e-144	protein\|expressed protein
Brachypodium v1_2	Bradi5g05700.1	284	3e-154
Arabidopsis v10	AT2G43110.1	288	4e-73	unknown protein; Has 212 Blast hits to 211 proteins in 96 species: Archae - 0; Bacteria - 6; Metazoa - 62; Fungi - 91; Plants - 31; Viruses - 0; Other Eukaryotes - 22 (source: NCBI BLink). \| chr2:17922067-17924291 FORWARD LENGTH=288