barSeed - Barley Seed Development Database

Probe CUST_11067_PI390587928

Source Contig U35_7679

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_11067_PI390587928	Hv_44K_v2	ATTTTAACTGTCGGAATTGTGACGACTCCGTTTTCATTTGAGGGAAGAAGGCGAGCACTC	844	GeneList: darkorange2 MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.260	1.014	1.801	1.246	0.485	0.482
Raw	69.934	79.156	139.300	144.757	20.930	22.577

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_57285.1	4013	2e-24	3058 - 3117	100	60 / 60	minus	ABC11346 ABC20133
JLOC1	JLOC1_37104.2	1528	8e-25	510 - 569	100	60 / 60	plus
JLOC1	JLOC1_37104.1	4090	8e-25	938 - 997	100	60 / 60	plus
Harvest35	U35_7679	980	3e-25	845 - 904	100	60 / 60	plus

Contig Sequence (980 bp)

>U35_7679 980 Hv_44K_v2
CCAAAGCCGCCGGCCAACCCAAAGGCAACCCGTGCCCTAGAGCTGCCGGCCGGCCGCCGC
ATACCCGCGTCGTCTCCATCGCCGTCTCCGCTCCACCTCACCGCCTCCCCGCCGTCTCTA
CCCCGTTCGCAATATCGGGCATCGGTCCTGAGGTATGAGCTTCTCCACAGGCTTGGGGTG
CGCCGGCGCACACCCGGCACGCCATCTTGATCCGCCGCCGGCCGGGAAGACATTTCGTGG
TGTCTGCGCGACGCATTTCCTGAGAAAGAGGCGGTTCGCCGGTTGCCCTGGTCGATTCGA
GTGCTCCGCAAACTCGCGCCAATCTGGGCCCCGGCGCACCACCAAGGACACCATGTACGA
CCTCCACCCCGAGATCTCGATGCTCTACGGAGAGGATAATGGCGCAATCGCTGCCCCCAG
CAAGGAGCAGGGTCTCGGGAAAGCAATTGAGACCTTACCGCTAGCAGACGCTTCCATCGC
GTACCGCTACAATGAGCCCCGGATTAAAGTCATTGGGGTTGGAGGTGCCGGCTCCAATGC
CGTGAACAGGATGATTGAGAGTTCCATGAAGGGGGTGGAGTTCTGGATCGTGAACACTGA
TTTCCAGGCTATGAGGATGTCACCCATTGACCCGGCAAATAGGCTGCCGATTGGCCAGGA
ACTGACACGAGGTCTTGGTGCTGGTGGGAACCCAGAAATTGGCATGAATGCAGCCAAGGA
AAGCCAGGAGCTGGTAGAAAGGGCAGTGTCTGGAGCTGATATGGTTTTTGTCACGGCTGG
AATGGGAGGTGGAACAGGTACTGGTGGGGCGCCCGTTATAGCAGGGATCGCANAGTCTAT
GGGTATTTTAACTGTCGGAATTGTGACGACTCCGTTTTCATTTGAGGGAAGAAGGCGAGC
ACTCCAGGCACAAGAAGGAATTGCGGCCCTGAGAAGCNATGTTGATACACTGATTGTAAT
CCAAATGATAGTTACTGACT

Homology of Contig U35_7679 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os05g37160.1	473	1e-107	protein\|tubulin/FtsZ domain containing protein, putative, expressed
Brachypodium v1_2	Bradi2g23900.1	474	5e-136
Arabidopsis v10	AT2G36250.1	478	2e-74	\| Symbols: FTSZ2-1, ATFTSZ2-1 \| Tubulin/FtsZ family protein \| chr2:15197661-15199932 REVERSE LENGTH=478