barSeed - Barley Seed Development Database

Probe CUST_11063_PI390587928

Source Contig U35_7683

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_11063_PI390587928	Hv_44K_v2	CTGACAATTTCATACCTTTGGAGCACGGCCTCTGATATAATTTATGTTGTTATACAGTTA	1030	GeneList: brown MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	2.006	1.937	1.166	0.817	0.529	0.628
Raw	362.214	520.590	280.630	298.912	70.838	91.791

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_51937.1	1698	9e-22	1491 - 1548	98	57 / 58	plus	ABC16469
JLOC1	JLOC1_33217.2	1766	5e-22	1555 - 1612	98	57 / 58	plus
JLOC1	JLOC1_33217.1	1713	5e-22	1502 - 1559	98	57 / 58	plus
Harvest21	ABC16469	1105	3e-25	1031 - 1090	100	60 / 60	plus	ABC16469
Harvest35	U35_7683	1105	3e-25	1031 - 1090	100	60 / 60	plus

Contig Sequence (1105 bp)

>U35_7683 1105 Hv_44K_v2
GGGCTACGAGCCTTCTGGAAAGGAAATCTTGTAACTATTGCACATCGGTTACCTTACTCC
TCAATTAGTTTCTATACTTATGAGAGATATAAGAATTGGCTTCAGATGATACCTGGTCTC
GACAACAGTGGTGGATTAGGTGCCGATGTTGGTGTCAGAATGGTAGGCGGTGGCTTGTCT
GGGATAACTGCAGCTTCTTTGACATATCCACTGGACTTGGTACGGACACGTCTGGCTGCT
CAGACGAACACAGCCTACTACAGGGGCATATCTCATGCTCTTTTTGCGATCTGCAGAGAT
GAGGGTCCCAGAGGGTTGTACAAGGGTCTTGGTCCCACTTTACTGGGAGTAGGCCCCAGT
ATAGCAATAAGCTTCTCAGTTTATGAAACTCTACGTTCGCATTGGCTACTAGAGAGGCCA
TATGATTCCCCTATCTTTATCAGTTTGGCTTGTGGAAGTCTTTCAGGAGTTGCATCATCA
ACTATTACCTTTCCATTGGATCTTGTAAGACGCCGCAAGCAGTTGGAAGGTGCAGCTGGG
AGGGCCAATGTTTACAAGACAGGACTTGTTGGAACGTTTGGGCATATTATTCAGACAGAA
GGTTATAGAGGGTTGTATAGAGGGATCTTGCCTGAGTACTGCAAAGTGGTTCCAAGCGTT
GGCCTCATTTTTATGACATACGAGACACTGAAGTCCATGTTCGCAGGAGGGGCATCAGAT
GAATAGATCTCCAAAGTCCGATCATGCTTGACAGTTTTGACACCTGGGCCAGAGTAGCAT
TGGAGGTTATTAGGGAGGGAGGGGGAGGAAGAGATGTGTTTGTAGCATATGGTAGGATTT
AGGTGGTGCTAAATTTTGGAGTTCATTACGTAGCAGTATCATCAGACAATATTTATATGG
CTATAGGTTTTTTTGTAGTGCACCCAAGAAGATCAGTAAGTGCCATAGGTCTACCAAAAT
TTTGCTGTCCACCCTTGTTTTGTGTATGTTCACGTTTTCAGTTGGTAATGTACTGGCTAC
CATTTTCAGCCTGACAATTTCATACCTTTGGAGCACGGCCTCTGATATAATTTATGTTGT
TATACAGTTAAAAAAAAAAAAAAAA

Homology of Contig U35_7683 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os03g16080.1	347	5e-148	protein\|mitochondrial carrier protein, putative, expressed
Brachypodium v1_2	Bradi1g66990.1	343	4e-161
Arabidopsis v10	AT3G55640.1	332	1e-113	Mitochondrial substrate carrier family protein \| chr3:20640048-20642411 FORWARD LENGTH=332