barSeed - Barley Seed Development Database

Probe CUST_1105_PI390587928

Source Contig U35_33149

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_1105_PI390587928	Hv_44K_v2	CTATGCATGCCTGATGTAAATCATCCCATCCTGGTTATATATATAGTTCTGCTTGCCAGC	336	GeneList: yellow MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	2.526	2.462	1.164	0.643	0.192	0.276
Raw	162.001	255.014	101.857	90.897	8.948	14.817

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
JLOC1	JLOC1_5997.1	791	2e-21	648 - 704	98	56 / 57	plus
Harvest35	U35_33149	748	3e-25	337 - 396	100	60 / 60	plus

Contig Sequence (748 bp)

>U35_33149 748 Hv_44K_v2
GCGAAGTTGGGCTACAGGAAATGCGTCGTTCCCAAGACTTCGGTGAAGCTGCTCAAACCT
CTCGATCTAGATATCCAGATCTTGCCCTGCAACAACCTGAAGGAGTTCATAAACACCGTG
TTCAGGCCAGAAGCATGATGTTGCATCCTGGCAACAGCTAGCTGATTGACTGACTGTAGG
TTTTTAGCGTGCGTACTGCATAGGTCCATTAGTCATCGGTAACTTGTTCGTCCATTTGAA
GTCCCATTTATACACTTCAACCGTTCGAATCCCCCAGCCATTTTGTGCATGTTCCTTTTG
CTAGGAACCACGGCTCACCATGTTCACAAGTTGCCACTATGCATGCCTGATGTAAATCAT
CCCATCCTGGTTATATATATAGTTCTGCTTGCCAGCGGCCGCTCGACACGAAGGCCCTCC
TCCGCATCTTCAGGCCCTACTGTTCCAGACCGGAGGCCTTCTTCCCGTTCGTAACCGACT
CCCTGAAGCTGCTGACCATGAGAGACACAGACGCTCAGTACTTGCTGGAAGCGCTCAAGA
ACGGGAAGGACGATGGAGGCAAGTCTGGCCTGAGGCAGCATGGGTTGCACCATGTGGATG
CTAGCCAGGCCGTCAAAGTCCTGAGAAGCAGGAAGTCCGGTGGATAATCTCGTTAGCGGT
ACAAAAGCAGGTGCCGCTGAGACCTGTGGCTGACTAGAATTCTAGAAAGAAGCTGATCTT
GCCGTGCCGGTGCAGGCAGGTGTCCTCC

Homology of Contig U35_33149 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None