barSeed - Barley Seed Development Database

Probe CUST_11047_PI390587928

Source Contig U35_7699

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_11047_PI390587928	Hv_44K_v2	AATAGGTTGGGAGATGCGGTTTGTTTTGCTGTGTTTTTGTAGCGGTCTTTGAGTTCCGTG	560	GeneList: darkslateblue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.505	1.856	1.102	0.816	0.336	0.390
Raw	442.321	858.731	436.212	507.595	73.058	93.945

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK364639	2893	2e-24	2592 - 2651	100	60 / 60	plus	ABC43226
MLOC	MLOC_60609.1	2354	2e-24	1968 - 2027	100	60 / 60	plus	ABC43226
JLOC1	JLOC1_39539.1	2523	8e-25	2103 - 2162	100	60 / 60	plus
Harvest21	ABC43226	553	3e-25	83 - 142	100	60 / 60	minus	ABC43226
Harvest21	ABC16576	660	3e-25	561 - 620	100	60 / 60	plus
Harvest35	U35_7699	702	3e-25	561 - 620	100	60 / 60	plus

Contig Sequence (702 bp)

>U35_7699 702 Hv_44K_v2
CTCAGCGAGCGAAGACTCCCATGTCTACATGTGGAGAAACGACGACGGCCCTGAGCAAAG
AGGAAGCAGCAAGGGCGTCGTTTCTGTCGCGAATTCCTACGAGTACTTCTACTGCCAGGG
CGTGACGGTGGCCGCCGCCTTGCCGTCGACGGTGGGGTCAGCCACGACGTCCCGAACCAA
CTCCAGGAGGCGCGAGGAGCTGGATTGTGTGTCCGAGTACCACCCCCTGTCCCACGCAGG
AGACGGAGACTCCTCTGATTTCCAGCAGCAGCAGCAGCAGCAGCAGGGAGGCAATGACCT
AAGCAACGGCTCGAATCATGGCGGCGACAGAGCGTCCGCGACCTGGCCCGAGGAGCTCAT
GACGCCGACGAAACAGAGCCCGCGGTCCAGCACCAGCCTCCCCGACGGTGCCGCCGGGCA
GGCTCCGAGCCGGTCGGCCTGGGGCATGGCCATCGCCACGGCAGGTGGTGGGGGTCAGAT
CAGGATACTCCAGAATTTTGGGTTCCCCGTCAGAGTATAGTAGTAGCAGCGGCCCTGTAG
GAGGGTGATTTTTGTGTGTAAATAGGTTGGGAGATGCGGTTTGTTTTGCTGTGTTTTTGT
AGCGGTCTTTGAGTTCCGTGCGATTGCGCTTGGGTTTGGCTGATGCGTGCATACTCGACT
AACGACGGCCTTGTTCGCTTTTACTAAAAAAAAAAAAAAAAA

Homology of Contig U35_7699 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None