barSeed - Barley Seed Development Database

Probe CUST_11040_PI390587928

Source Contig U35_12707

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_11040_PI390587928	Hv_44K_v2	TTCTGCGTAGATCCAAATCAATATCCTCAAGGTGTGGTGCCCCTGCCATTTGATAAGATC	54	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_72298.1	1755	2e-24	122 - 181	100	60 / 60	plus	ABC11775
JLOC1	JLOC1_48081.1	1755	8e-25	122 - 181	100	60 / 60	plus
Harvest21	ABC24000	725	3e-25	55 - 114	100	60 / 60	plus
Harvest35	U35_12707	725	3e-25	55 - 114	100	60 / 60	plus

Contig Sequence (725 bp)

>U35_12707 725 Hv_44K_v2
GTCTCTCTCTCTCTCTCTCCCCCCAGTTTCAAAAGAAAATTGTCGATCGGTAGCTTCTGC
GTAGATCCAAATCAATATCCTCAAGGTGTGGTGCCCCTGCCATTTGATAAGATCCGTGCG
GGTCTGGGAGAAAGGCGCCTCCTTTTTCTTCCGGAAATGTGTCCGTCCGGGGCCGCGAAG
GCACGGCGGAAGCGCAAAGGTGCGTCCGGTCGCCCACCCGCCGGTAGAAAGCGCCGGCGG
GCCCCTGAACCGGCGCTGGAGCCCAGCGGCTGGGCATCTCTCCCGACCGACAGCGCAGGC
CTCGTCTCCGGACGGTTGCTAGCCGATGACGTGGTGGACTACCTCACCTTCCGCGCCGTC
TGCTCGGGCTGGCGCACCAGCACGTCCGACCTAGGCATCCTGGCCCTGAGCAAACCGCAG
CTCCGCCCGCGCGGCTGGATTGCGCTCTGCGACGGAGACGCGGCGCCCCTGGACGGTGCC
GGCGAGATCACCTTCTTCCACACGCGCACGGCGCGCCGCCTGCGCGTCCGCCTCCCCGAC
CTCCGGTGCCACAGGGTCGTCGGCTTCACCGACGGCCTCGTCATCCTGCTGCACAAACGC
GCCACCGTCGTCCCGCGTGGTCCACCCCTTCACCCTCGCTACGGTCGAACTCCCGCCCCT
CGCCCCTGCCTTCCGCAGTGCGATTAAAGACCGAGGAGCCCTGTTCCACATGAGCGCCTT
CGTCT

Homology of Contig U35_12707 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None