barSeed - Barley Seed Development Database

Probe CUST_11024_PI390587928

Source Contig U35_12723

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_11024_PI390587928	Hv_44K_v2	TAGAATTACCGTTCATCATCATCGCCTCGTGATTGGCAATTCTACTGCCAGATTTTATTT	449	GeneList: turquoise MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.175	1.657	1.198	0.965	0.254	0.243
Raw	74.051	164.262	100.453	134.680	11.516	12.534

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_54046.3	1445	2e-24	141 - 200	100	60 / 60	minus	None
MLOC	MLOC_54046.2	1842	2e-24	201 - 260	100	60 / 60	minus	None
MLOC	MLOC_54046.1	1767	2e-24	242 - 301	100	60 / 60	minus	None
JLOC1	JLOC1_34771.1	1955	8e-25	1534 - 1593	100	60 / 60	plus
Harvest21	ABC24163	507	4e-24	450 - 507	100	58 / 58	plus
Harvest35	U35_12723	509	3e-25	450 - 509	100	60 / 60	plus
Harvest35	U35_32722	695	1e-23	247 - 306	98	59 / 60	minus

Contig Sequence (509 bp)

>U35_12723 509 Hv_44K_v2
ATCACCCTCAACAAGCCCAAGTGGCTCATTGCCATGGCCAACATGATGGTCGTCGTTCAC
CTCATCGGTAGCTACCAGATTTATGCGATGCCGGTGTTTGACATGATGGAGACGTTTCTG
GTGAAGAAGTTGGAGTTCGCACCAGGCATTACGCTCCGTCTGATCACCCGAACTATCTAT
GTTGCCTTCACGATGTTTATCGGCATGAGCTTCCCGTTCTTCGGTGGTCTCATCGGGTTC
TTTGGTGGGCTCGCCTTCGCACCGACGACCTATTTCCTTCCCTGCATCATGTGGCTCATC
ATCTGCAAGCCCAGGATATTCAGCCTCTCATGGTTCACCAACTGGATTTGCATCGTCCTT
GGTGTGCTTCTGATGATCGTGGCGCCCATCGGAGGGCTCAGGCAGATCATCATTTCTGCC
AAGACATACAAGTTCTACTCATAGATCACTAGAATTACCGTTCATCATCATCGCCTCGTG
ATTGGCAATTCTACTGCCAGATTTTATTT

Homology of Contig U35_12723 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os08g03350.1	448	3e-69	protein\|amino acid transporter, putative, expressed
Brachypodium v1_2	Bradi3g14150.1	446	2e-75
Arabidopsis v10	AT1G67640.1	441	7e-58	Transmembrane amino acid transporter family protein \| chr1:25352128-25353908 REVERSE LENGTH=441