barSeed - Barley Seed Development Database

Probe CUST_11021_PI390587928

Source Contig U35_12728

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_11021_PI390587928	Hv_44K_v2	TCCCCGGCTCCGGCAGCATCAGGAGATGGAGGAGAACATCAAGATCGTGGAGGTGGACAC	248	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK376225	1828	2e-24	823 - 882	100	60 / 60	plus	None
MLOC	MLOC_39638.1	700	2e-24	344 - 403	100	60 / 60	plus	None
MLOC	AK369677	1671	7e-23	528 - 587	98	59 / 60	plus	None
JLOC1	JLOC1_25856.1	706	8e-25	333 - 392	100	60 / 60	plus
Harvest21	ABC34768	548	3e-25	249 - 308	100	60 / 60	plus
Harvest35	U35_12728	642	3e-25	249 - 308	100	60 / 60	plus

Contig Sequence (642 bp)

>U35_12728 642 Hv_44K_v2
GGGCAAGATCAGTCCGTCTTCAGATCCTACCTGGCGAGGAAGGCACTGTGCGCGCTCAGG
GGGCTGGTGAAGCTGCAGGCTCTGGTGCGCGGCCACCTCGTCCGTCGGCAGGCCAGCAAC
ACGCTGCGCTGCATGCAGGCGCTCGCCGCCGCCCAGAACAGGGCGCGCACGGCGCGCCTC
CGGCTCCTCGACGACGAGAGGCCCCTCCGCACGCCACGGATGACGCCCACACGCCGCTCG
CCGCACCATCCCCGGCTCCGGCAGCATCAGGAGATGGAGGAGAACATCAAGATCGTGGAG
GTGGACACGGGGGCGGGCGACGTGCACTGCACGCCGAGGACGTCACGGCGCAGCAGCTGC
TACGCCACGCCGCTCTGCCGCACGCCGTCCAAGGTGGAGCTGTACCAGAAGGTGTCGCCG
ACGCCGTCGGCGCTGACGGACGCGAGCGGGCGGTCGTACAGCGGCCGGTACGACGACTTC
TCGTTCGGCACCGCGCGGGCCAGCCCGTACCACTACTACTACTCCTCGGACGCGTCGTGC
AAGCAGCCGCCGCCGCAGCAGCAGCAGCACCAGGGCCACGGCGCCGGCGCCGGCGCGGAC
CACCCGCTCCTGTCCCCAGCTACATGGCCACACGCAGTCGTC

Homology of Contig U35_12728 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None