- Probe CUST_1101_PI390587928
- Source Contig U35_45126
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_1101_PI390587928 | Hv_44K_v2 | TCGATCCCCTTCATGATTGCACATGGTGCAAGTGCATCTTCAGGATTCTTCTGGCTTAAT | 125 | GeneList: turquoise MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 1.167 | 1.653 | 1.434 | 0.953 | 0.307 | 0.297 |
| Raw | 30.392 | 62.033 | 49.404 | 45.730 | 4.619 | 5.118 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_36871.1 | 3191 | 2e-24 | 865 - 924 | 100 | 60 / 60 | plus | ABC09432 |
| MLOC | MLOC_36871.3 | 1975 | 2e-24 | 371 - 430 | 100 | 60 / 60 | plus | ABC09432 |
| MLOC | MLOC_36871.2 | 2334 | 2e-24 | 578 - 637 | 100 | 60 / 60 | plus | ABC09432 |
| JLOC1 | JLOC1_23795.1 | 2874 | 8e-25 | 581 - 640 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC43583 | 275 | 3e-25 | 126 - 185 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_45126 | 275 | 3e-25 | 126 - 185 | 100 | 60 / 60 | plus |
Contig Sequence (275 bp)
>U35_45126 275 Hv_44K_v2 ACGGCTCCACAGAGCTCGCCCTCCGCCCCACACGCGGCCCGGGGGTTGAGGAGTCCGAAC CTTACCGCCTCTTCAACCTCGATGTGTTCGAGTACCTCCACGACTCGCCCTTTGGGCTGT ATGGGTCGATCCCCTTCATGATTGCACATGGTGCAAGTGCATCTTCAGGATTCTTCTGGC TTAATGCCGCGGAGATGCAGATTGATGTGCTTGCACCAGGGTGGGATGGCGCAGCATCGT CGGAGAACGGGAGAATTGACACGCTGTGGATGGCT
Homology of Contig U35_45126 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | LOC_Os03g11720.1 | 920 | 1e-52 | protein|glycosyl hydrolase, family 31, putative, expressed |
| Brachypodium v1_2 | Bradi1g69780.1 | 915 | 5e-55 | |
| Arabidopsis v10 | None |