barSeed - Barley Seed Development Database

Probe CUST_11013_PI390587928

Source Contig U35_24708

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_11013_PI390587928	Hv_44K_v2	AAAGTCAGAGCATTTCAGCTCTGCAGAATGCAAATGATGAATCACAACAGAGCAAATGTG	918	GeneList: darkgrey MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.276	0.431	1.314	1.308	1.029	1.022
Raw	21.508	45.034	132.849	187.101	56.373	60.959

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_56501.2	3413	2e-24	2866 - 2925	100	60 / 60	plus	None
MLOC	MLOC_56501.1	3551	2e-24	3005 - 3064	100	60 / 60	plus	None
JLOC1	JLOC1_36546.2	3304	8e-25	2757 - 2816	100	60 / 60	plus
JLOC1	JLOC1_36546.1	3583	8e-25	3036 - 3095	100	60 / 60	plus
Harvest21	ABC21236	978	3e-25	919 - 978	100	60 / 60	plus
Harvest35	U35_24708	978	3e-25	919 - 978	100	60 / 60	plus

Contig Sequence (978 bp)

>U35_24708 978 Hv_44K_v2
ATAGGCAGCTGGAAGAAGCTAAGACAAATCTACAGGCGGAGATCATTCTGTTACAAGGAG
AAAAGCAACAAGCCGTTGATGATTTGCAGCAGTCAAACACTTCAGTCAAGACCCTTGAAC
GCAAGTTAGAGCAGCAAATAGAACAAAACAATATTCTACAGCTTGCCAATGAAGATCTGC
AGAATATTAACTGTAACCTGAAGAAACAATTCGAAGATGCCATGGTTAGCCACGACGCTG
AAATTATAGTACTCCAAGACGAGAAGAAAAAAAACCTGTCGGAGTTGCAGCAGTCCGAGG
CTTCCATCAAGAATCTAAGAATTGAGTTAGATCAAGGACGAGAGCAAATTTTGATCTCGC
ATCTAGCTAATGAAGAAATGAAGAATAGAAATGCTAGCTTGAACAAGCAATTGGAGGAAT
CAAGGAGCAGCTTGTCTGAGGAGATTGTAACACTAAGTGAGCAGAAGGAAACAGCCCTAT
CGGAGTTACACCAGTCTCATGCTTCCATTGGGAACTTGGAGACAGAGTTAGAAAAGCGAA
GTGTGAGTGTTTCAGTTTTGCAGCAAGCTAATGATGACTTAAAGAAGAACATCTGTGCCC
TTACCGAACAATTCAACGAAGTCAAGGTTGAGTTACAGAAGAAGATTAAAGTGACACAAG
AAGAGAAGGATACGGTTTTAACCCAACTAAAGCAGTCAGAGTTTTCTATCAAGAACCTTG
AATGTGAGATAACTCGGTTGAAGGAAGATCTTTCAATTCAGCTAGAAAACAACTCCAGCT
TGAACAAACAGTTTGAGGAATCAAGGACCAATCTGCAGGGGGATATTCTAGCACTTCGTG
AAGAGAAAGAAACAGTTCTGTCAGAGTTACATCAGTCTCAAGCTTCTGTGAGGAACTTTG
AGAGAGAGCTAGAAAAGCAAAGTCAGAGCATTTCAGCTCTGCAGAATGCAAATGATGAAT
CACAACAGAGCAAATGTG

Homology of Contig U35_24708 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g46810.1	1516	2e-91	protein\|viral A-type inclusion protein repeat containing protein, expressed
Brachypodium v1_2	Bradi2g45490.1	1466	9e-135
Arabidopsis v10	None