barSeed - Barley Seed Development Database

Probe CUST_11008_PI390587928

Source Contig U35_12733

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_11008_PI390587928	Hv_44K_v2	GTTGGGGGGCTAAGGAAAATCGATCTGTATACAGGAAAAGAAAGATAGGAAGTGTATGTT	182	GeneList: brown MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	2.359	3.153	1.291	0.720	0.584	0.747
Raw	40.881	84.793	30.974	28.648	7.486	10.671

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK363880	2971	2e-24	2891 - 2950	100	60 / 60	plus	ABC18571
MLOC	MLOC_58467.3	2968	2e-24	2719 - 2778	100	60 / 60	plus	ABC18571 ABC47128
MLOC	MLOC_58467.2	3231	2e-24	2981 - 3040	100	60 / 60	plus	ABC18571 ABC47128
JLOC1	JLOC1_37990.2	3261	8e-25	2881 - 2940	100	60 / 60	plus
JLOC1	JLOC1_37990.1	3367	8e-25	2987 - 3046	100	60 / 60	plus
Harvest21	ABC47128	251	3e-25	178 - 237	100	60 / 60	minus	ABC47128
Harvest35	U35_12733	409	3e-25	183 - 242	100	60 / 60	plus

Contig Sequence (409 bp)

>U35_12733 409 Hv_44K_v2
GAGAGAAGAAAGAAAGCAGTAGCCCCAGAGAAGACAGAGAGATAAAATTGCATGGTGCCT
CTGGAGGTGGTGCAGGGGATGGGAATATATATTAATATACGAGACAAATCATCATCTTCA
TTTTCTTCTTCCTCAGATGATTCTTAATTTAGCTAGGTTAATTCCTTTCGTTAGGCATTA
TTGTTGGGGGGCTAAGGAAAATCGATCTGTATACAGGAAAAGAAAGATAGGAAGTGTATG
TTATAGATTTGTTTTGGTCACTCCTTTTTTTTGGTTCTCTTGTCCTGTTCCATGTTCTGT
TTCTTGTTCCGTTTTAGTCTTGGTGTACTATTTTTTTCCTCCTTTTCATCTGTAACTAAA
CATAAGAGAAACATACATACATACATATACAAAAAAAAAAAAAAAAAAA

Homology of Contig U35_12733 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None