barSeed - Barley Seed Development Database

Probe CUST_11002_PI390587928

Source Contig U35_24711

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_11002_PI390587928	Hv_44K_v2	TGCTCGTTTGTTAGTTGTTAATGCTTGATGAAGCTAATTATTAGAGTTATGACTCCTGGT	553	GeneList: white MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.005	1.340	1.523	1.008	0.307	0.323
Raw	168.076	369.389	348.177	369.089	37.880	44.913

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK356011	1490	2e-24	1341 - 1400	100	60 / 60	plus	ABC36884
MLOC	MLOC_21615.1	1781	2e-24	931 - 990	100	60 / 60	minus	ABC36884
JLOC1	JLOC1_14993.1	1652	8e-25	231 - 290	100	60 / 60	minus
Harvest35	U35_24711	720	3e-25	554 - 613	100	60 / 60	plus

Contig Sequence (720 bp)

>U35_24711 720 Hv_44K_v2
TCATTGCCAAGCTGTGCATCACTTTCCCATGGCTGCTATCCTTCAGCTCGGAGCGGGTCC
AGCCAGTAATGGTGTGCGCCCAAGGTCTCGGCGTGCCCCGTCAATCCAGGATGTTCAGAG
CAGGTCAGAGTTCCTCATCTCCGAGGTGGGGTTCGAGCCGGGGTACATTGCTCATCGGCC
CATAATTGTCTGTTTTAGCCTAAAGGGCCGGCTCAGGCCCCGGTACTACGTTTTAAAGTT
TCTCAAAGAAAATGGATTGCTCAAGGCTGACCCGAGCTATTATTTGAGTTTCATGGTGAA
TGAGACTGCTTTCTCCAAGAGGTACATATGCCCTCACAAGGAGGCTGCACCATACCTCGC
TGAAGACTATGCAACCGCTTGCAAAGGGGAAGTGCCGGCTAGATTCATATTTGCATGAAC
TGAGAACACAATATTGGAATTTTGATGCTTACAGTACTACATATTCCACTTTATTATGCA
GTAAGCTTGTAAGCTTTGTTTCAGTGTTCTTGCCTAACTAAATGTTGGCTGTTTGATACA
GTATGCCTGCCACTGCTCGTTTGTTAGTTGTTAATGCTTGATGAAGCTAATTATTAGAGT
TATGACTCCTGGTATCTCCATTTCATCGATCATTAGAGAAGAAAGCATGGCATGGTTATG
AACTTGTTCATCCTTATGTCATATCGACACACATATTGAAAGTAAAAAAAAAAAAAAAAA

Homology of Contig U35_24711 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None