barSeed - Barley Seed Development Database

Probe CUST_109_PI390587928

Source Contig U35_48867

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_109_PI390587928	Hv_44K_v2	GTGGAATGAGTGAGATCCCTTTTTGAACATGTCAATTGTCAGGTCATTTTGCTGTGCAAA	14	GeneList: brown MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.805	2.062	1.260	0.856	0.360	0.452
Raw	1880.043	3373.071	1793.127	1887.508	282.530	384.675

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
Harvest35	U35_48867	311	3e-25	15 - 74	100	60 / 60	minus

Contig Sequence (311 bp)

>U35_48867 311 Hv_44K_v2
TTTTTTTTTTTTTTTTTGCACAGCAAAATGACCTGACAATTGACATGTTCAAAAAGGGAT
CTCACTCATTCCACGCTTGCTGCCCAGGCAGTCATTAAACACTTCACTAAAACAGGGTCA
GGGTTCCTAATCATGGGCATATAACCCCCAATACAAGTACAATCAAGTTCAGGATTCCTA
ATCATACACCGCAAATGGGCTTGCATCCTTAAATGTCATTATGCAGAAAGGAAATCTCAA
ATATTGCTCTGAACTGCGAATCTTCACCAACTGGAACTGGAGGCCTGGAAAGGGCCTGGC
CTATGTTTCTC

Homology of Contig U35_48867 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None