barSeed - Barley Seed Development Database

Probe CUST_10982_PI390587928

Source Contig U35_9583

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_10982_PI390587928	Hv_44K_v2	AAAGATTTCATCTTTCTTTGCTTAGTGCAAAAGCTTGCTGCGCCGCCGCTGTTAATGGCT	44	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_10811.1	2502	2e-24	2206 - 2265	100	60 / 60	minus	ABC07135 ABC11168
JLOC1	JLOC1_7100.1	2629	8e-25	200 - 259	100	60 / 60	plus
Harvest21	ABC20351	512	3e-25	45 - 104	100	60 / 60	plus
Harvest35	U35_9583	512	3e-25	45 - 104	100	60 / 60	plus

Contig Sequence (512 bp)

>U35_9583 512 Hv_44K_v2
CTTGGATCTTCTCCACACCATCATTACCATCACCAGCGAGCCACAAAGATTTCATCTTTC
TTTGCTTAGTGCAAAAGCTTGCTGCGCCGCCGCTGTTAATGGCTGCCTTCCTCTAGAAGC
GCTCCACAACGCATCCAGCCAGCCAGCCGGCCGGCGGAGTCCGCGGACTCCCCGCCCCAG
CCCACACGCCAGGCCCCTCCCGAGCAGCACCGCTACATACAAAGCGCGCAGCAGTTCCTC
CCCGGATTCCATTTGGTTTCCCCTCGATTTCCTCTTCTTTTTTCTCCACGGCCGCCGTCA
GCCGCCCCCGTCCGCTGAATCTACCTCCCGCCGCCGGCCGTCCGCCCCTTAATCGGCCGT
AGCCGCCGGGCCTCTGACGCCGCCATGGGCAACTGCTGCGGCGCGCCGTCGACGCAGGGG
GGCGGCGAGCGGAAGAACAACCGGAGGAAGGCCAAGGCCAACCCCTACACCGTCGCGTAC
AACCGCGGCGCGGCGGGGCCGCCGGCGCGGGC

Homology of Contig U35_9583 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None