barSeed - Barley Seed Development Database

Probe CUST_10980_PI390587928

Source Contig U35_9585

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_10980_PI390587928	Hv_44K_v2	TTTGGTGCAAAGATTACTTCCAAGTCAATTCGTTCCCATCTCTGCCGATCCTGCAAGCTA	262	GeneList: None MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.974	0.813	0.720	0.588	2.121	1.198
Raw	3.654	3.488	2.575	3.994	6.301	3.092

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK353571	2181	2e-24	235 - 294	100	60 / 60	plus	ABC18280
MLOC	MLOC_14129.1	1228	2e-24	496 - 555	100	60 / 60	plus	None
MLOC	MLOC_14129.2	816	2e-24	282 - 341	100	60 / 60	plus	None
JLOC1	JLOC1_9630.1	1208	8e-25	447 - 506	100	60 / 60	plus
Harvest21	ABC21117	704	3e-25	263 - 322	100	60 / 60	plus
Harvest35	U35_9585	704	3e-25	263 - 322	100	60 / 60	plus

Contig Sequence (704 bp)

>U35_9585 704 Hv_44K_v2
AATACTCCCAAATCACCACCAAACTAGCCTCAACCTCCTTCCCCATCCCTCTCTCCTCCC
TTCTCCCTCCTATCCATTAGAGATCTCCATTGGAGAGAGCTCTACCTGGCCTGCGCCTGC
CTGCTGCTCATGCACTGCACTGCCGATCTTGCTACCACACCAAGCCCAGGTTCATAACCG
AGTCGCTATATAGCCCGTAGCTCCATCTACCCATCGATCAAGATCGCTGCCATCGTCAAG
TCAGCTGAGATTTAGAGTGGTGTTTGGTGCAAAGATTACTTCCAAGTCAATTCGTTCCCA
TCTCTGCCGATCCTGCAAGCTACGTACGCCGAGATTGGGATGCTTGAGGTGGCCACGCTG
CAAAGCCCTAGTCCGGCCATATTCAGCCTCGGCGACCACCATGTCGATGTCGGGTTCCCG
GAGGCCACCGTGGAGGACGACGACTTCCTGCTGGACTACATCGACTTCAGCGCGTGCGAC
ATGCCCTTCTTCCACGTCGACGACGGCGACGACGACATCCTCCCCGACCTCGAGGTCGAC
CCGACCGAGCTCCTCGCCGAGTTCGCCGACGAGCCGACGACGGTGCTGAGCCCAGCGCCA
GCGCCAGACGGTTGCGAAACCCACCATCACCATGGCGACGACGAGAAGACGACCGTGGAA
ACGGAACCACCAGCAGAGATGGACATGGAATTACCAGAAGGCAA

Homology of Contig U35_9585 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None