barSeed - Barley Seed Development Database

Probe CUST_1097_PI390587928

Source Contig U35_21171

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_1097_PI390587928	Hv_44K_v2	AACATTTTTGACGACATACACAGGAGATGGTACAACTCTAAGTGTCCAGCTCATCGGCGT	511	GeneList: cyan MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	5.281	2.981	1.666	0.483	0.120	0.138
Raw	316.361	238.995	133.124	55.722	3.717	6.084

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_16334.1	794	7e-23	216 - 275	98	59 / 60	plus	ABC15167
JLOC1	JLOC1_11245.1	678	4e-23	103 - 162	98	59 / 60	plus
Harvest21	ABC15167	694	3e-25	512 - 571	100	60 / 60	minus	ABC15167
Harvest35	U35_21171	694	3e-25	512 - 571	100	60 / 60	minus

Contig Sequence (694 bp)

>U35_21171 694 Hv_44K_v2
GCACCATCATTCCCGAATCTTCTTGCCATGGCGACTCCTCCCTCGCTAACCGTCGCGGTT
ATGACACTACTACTGGCTACGCTAGTCGCGCTCTCCTCGACGCACGAGGACCGCCACCAT
GCGCCGACTCAAGCATCGAGCCCCGCTCACCATCATGGCCATCTTGCCCCGGCGCCAAGC
CCTCATCACCATCACGAGCCGGCGTCGACGCCTGCTCCCATCCACGGGGGTCACCGCCAT
CATCACCATGCTCCGGCCCAGTCGCCGGGACACCGCCATCATCACCATGCTCCGGCCCAG
TCGCCTGGGCACCACCATCATCACCATGCTCCGGCCCAGTCACCGGGGCACCACCATCAC
CACCAAGCTCCAACGCCATCACCGATCCACCACCACCATCACCACGCTCCGGCGCCATCG
CTGATCCATCACCATCATCACCATGCCCCGGCACCATCACCGGTCCACCACCATCGTCAC
CACGCTCCAGCACCTTCTCGAGTCCACCTCGACGCCGATGAGCTGGACACTTAGAGTTGT
ACCATCTCCTGTGTATGTCGTCAAAAATGTTAATGGTAGCTTCAACGGTCCTTAAGAACA
TCCTACCTTGTATGGTTGGTGCAATGGGATGTTCACGCATATCAATAATGAGAGGGCAAT
CATTAATTTGAATGACTAAAAAAAAAAAAAAAAA

Homology of Contig U35_21171 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None