barSeed
Links

Probe Details

Probe IDChipProbe Sequence (60 bp)Probe locationDifferentially Expressed
CUST_10972_PI390587928Hv_44K_v2AAAGGCAATAAAGTTGATAGGCTCAGCGCGTTGCCTGATGACATTCTGGTCGACATTCTT554GeneList: orange
MasterList: None



Probe Values

3 dpa4 dpa5 dpa6 dpa7 dpa8 dpa
Normalized 0.9080.9151.8472.2700.7901.185
Raw 8.30411.70222.74247.2144.3888.721



Probe Sequence's BLAST hits in Barley Unigene Datasets

DatasetHitHit LengthE-valuePosition on Hit% IdentityMatchDirectionProbes on Sequence
MLOCMLOC_62747.321592e-24573 - 63210060 / 60plus ABC25703
MLOCMLOC_62747.227652e-241821 - 188010060 / 60minus ABC25703
MLOCMLOC_62747.123312e-241639 - 169810060 / 60minus ABC25703
MLOCMLOC_62747.422372e-241550 - 160910060 / 60minus ABC25703
JLOC1JLOC1_41088.123658e-25634 - 69310060 / 60plus
Harvest21ABC186507243e-25555 - 61410060 / 60plus
Harvest35U35_95947263e-25555 - 61410060 / 60plus



Contig Sequence (726 bp)

>U35_9594 726 Hv_44K_v2
GGGGATCGGGAGTCAGTTATGTGCCGCCGCCTGCCGTGCACCGATCGCCTCCCTCGCGCT
GTCGCAATTGCCGTCGAATGAGGATCCAGTGCTGCTTGCGGAGAGGCGACAAAATAAGCA
GCTCCCGCGCTTTGGGAGCTGTAGTCCCCAATCGAAGCAGCAGCTCTTTTGGGAGCGGCG
GTCCGCAAGCAACCGGCAATCGAAGCAATCAAGCGGCTCCGCTCCGAGCTGCAACCGGCA
ATCGAAGCAATCAAGCGGCTCCTCTCCGAGCAGCAGTCCTCAATCGAAGCGGCTCCCTTC
TTTAGCGGCAATCCGGAGTCAAAGCAGTCCTTCCCGGATTACATACAATCAGAAACAGGC
CCTTTTTCAAATTCAGTCTCCGAGTTTCCATTGGTGTCGGGAACCCAGCAGCTAATATAT
ATCTGGCCGGGTACCCGCCAATCTTCGGAAGAGACCAATTCTTGTCGCGGCAACTCGTGA
GCCTTCATCAGCTTCCAAATTCACGGTGACCAATCCTTCTCGGGCCTCGGCGGATCTACG
AGGGAGCCATGGGGAAAGGCAATAAAGTTGATAGGCTCAGCGCGTTGCCTGATGACATTC
TGGTCGACATTCTTGACCGACTCAATGTACCCGAGGCTGCAAGAACCAGCATCCTCTCAA
GACGGTGGAGTCAGCTCTGCGCCAAGCTCTCTCGGCTTATAATAAGTGCTCTGGACTTCC
TGCCCG



Homology of Contig U35_9594 to Model Species (E-value threshold 1e-50)

Pseudo-peptide datasetHitHit lengthE-valueDescription
Rice v7None
Brachypodium v1_2None
Arabidopsis v10None